C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small EDRK-rich factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000074884 Serf2 10090 + 2:121449195-121458313 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000099475 Serf2-004 121449383-121451054 protein_coding
  ENSMUST00000110615 Serf2-003 121449378-121451290 protein_coding
  ENSMUST00000134412 Serf2-002 121449368-121453005 retained_intron
  ENSMUST00000139253 Serf2-001 121449195-121453420 protein_coding
  ENSMUST00000148575 Serf2-006 121449412-121458313 nonsense_mediated_decay
  ENSMUST00000154418 Serf2-005 121449412-121458311 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099475ENSMUST00000110615ENSMUST00000134412ENSMUST00000139253ENSMUST00000148575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099475 N/A N/A N/A N/A N/A N/A N/A N/A 105.576±0.00 N/A N/A N/A N/A N/A
ENSMUST00000110615 N/A N/A N/A 28.490±0.00 N/A N/A N/A N/A N/A N/A N/A 63.176±0.00 116.395±43.72 N/A
ENSMUST00000134412 11.336±1.26 5.312±0.74 N/A 14.331±0.00 12.712±4.68 11.192±1.81 8.858±0.17 6.553±0.30 6.946±1.63 11.251±1.18 N/A 13.324±2.19 7.192±0.00 9.428±1.04
ENSMUST00000139253 32.804±2.80 13.008±0.63 81.557±22.64 31.475±17.32 19.794±2.01 35.197±9.90 31.469±3.60 36.687±8.10 40.182±25.90 28.306±0.76 47.644±3.14 22.881±3.96 43.418±25.39 21.730±7.82
ENSMUST00000148575 N/A N/A 79.262±0.00 94.369±30.23 N/A N/A N/A N/A 115.628±77.22 N/A 62.138±3.11 178.272±68.16 159.899±67.26 95.825±108.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000140264 SERF2 small EDRK-rich factor 2 protein_coding Homo_sapiens

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