C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small EDRK-rich factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139253 Serf2-001 ENSMUSG00000074884 10090 + 2:121449195-121453420 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000139253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000139253 32.804±2.80 13.008±0.63 81.557±22.64 31.475±17.32 19.794±2.01 35.197±9.90 31.469±3.60 36.687±8.10 40.182±25.90 28.306±0.76 47.644±3.14 22.881±3.96 43.418±25.39 21.730±7.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0002 VISTA 2:121250003-121852600

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249786 SERF2-002 protein_coding Homo_sapiens 0 1206
ENST00000299969 SERINC4-004 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000313143 DVL3-001 protein_coding Homo_sapiens 0.0000000000001 84
ENST00000319327 SERINC4-001 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000325192 C14orf28-001 protein_coding Homo_sapiens 0.00005 55
ENST00000339624 SERF2-005 protein_coding Homo_sapiens 0 708
ENST00000341322 BRWD1-004 protein_coding Homo_sapiens 0.00000000001 77
ENST00000376088 CLCN5-001 protein_coding Homo_sapiens 0.00005 57
ENST00000381359 SERF2-001 protein_coding Homo_sapiens 0 1206
ENST00000381998 MSR1-003 protein_coding Homo_sapiens 0.0002 53
ENST00000396058 ZNF197-001 protein_coding Homo_sapiens 0.00002 57
ENST00000401460 RP1-72A23.3-001 processed_pseudogene Homo_sapiens 2e-30 135
ENST00000402131 SERF2-006 protein_coding Homo_sapiens 0 627
ENST00000403425 SERF2-007 protein_coding Homo_sapiens 0 752
ENST00000409291 SERF2-013 protein_coding Homo_sapiens 0 250
ENST00000409614 SERF2-009 protein_coding Homo_sapiens 0 752
ENST00000409617 SERF2-016 nonsense_mediated_decay Homo_sapiens 0 235
ENST00000409646 SERF2-014 protein_coding Homo_sapiens 0 267
ENST00000409960 SERF2-011 protein_coding Homo_sapiens 0 773
ENST00000412697 SERINC4-005 nonsense_mediated_decay Homo_sapiens 9.94922e-44 182
ENST00000417761 RP11-296A16.1-001 nonsense_mediated_decay Homo_sapiens 9.80909e-45 185
ENST00000430901 SERF2-015 protein_coding Homo_sapiens 9.94922e-44 180
ENST00000445816 SERF2-003 nonsense_mediated_decay Homo_sapiens 0 833
ENST00000448553 SERINC4-002 nonsense_mediated_decay Homo_sapiens 2.00386e-43 182
ENST00000448830 SERF2-010 nonsense_mediated_decay Homo_sapiens 0 235
ENST00000457418 SERINC4-003 nonsense_mediated_decay Homo_sapiens 2.00386e-43 182
ENST00000475927 SERF2-008 retained_intron Homo_sapiens 5.04467e-44 182
ENST00000486144 SERF2-004 retained_intron Homo_sapiens 0 416
ENST00000526744 GPR61-006 processed_transcript Homo_sapiens 0.00001 55
ENST00000527748 GPR61-005 protein_coding Homo_sapiens 0.00009 55
ENST00000555826 C14orf28-002 retained_intron Homo_sapiens 0.00006 55
ENST00000620935 RP11-440E5.1-001 processed_pseudogene Homo_sapiens 1e-24 113

Loading