C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox C4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000075394 Hoxc4 10090 + 15:103018934-103036852 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000100164 Hoxc4-002 103034395-103036852 protein_coding
  ENSMUST00000165375 Hoxc4-001 103018934-103036405 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100164ENSMUST00000165375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100164 0.530±0.27 3.314±0.40 0.094±0.01 1.921±1.48 0.699±0.43 0.122±0.08 0.016±0.00 0.412±0.15 0.088±0.08 0.159±0.01 0.791±0.29 1.905±0.86 0.205±0.13 0.080±0.06
ENSMUST00000165375 1.312±0.17 0.843±0.00 0.138±0.00 0.731±0.00 0.572±0.43 0.057±0.01 0.039±0.03 0.443±0.23 0.038±0.02 0.135±0.07 0.841±0.12 1.051±0.32 0.202±0.10 0.069±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IMP anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048562 IMP embryonic organ morphogenesis
GO:0051216 IMP cartilage development
GO:0071837 IPI HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070338 hoxc4a homeo box C4a protein_coding Danio_rerio
ENSG00000198353 HOXC4 homeobox C4 protein_coding Homo_sapiens

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