C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165375 Hoxc4-001 ENSMUSG00000075394 10090 + 15:103018934-103036405 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165375 1.312±0.17 0.843±0.00 0.138±0.00 0.731±0.00 0.572±0.43 0.057±0.01 0.039±0.03 0.443±0.23 0.038±0.02 0.135±0.07 0.841±0.12 1.051±0.32 0.202±0.10 0.069±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IMP anterior/posterior pattern specification
GO:0048562 IMP embryonic organ morphogenesis
GO:0051216 IMP cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000103132 hoxc4a-001 protein_coding Danio_rerio 0 361
ENST00000303406 HOXC4-001 protein_coding Homo_sapiens 0 769
ENST00000430889 HOXC4-003 protein_coding Homo_sapiens 0 880
ENST00000507650 HOXC4-002 processed_transcript Homo_sapiens 3.00004e-41 172

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