C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100164 Hoxc4-002 ENSMUSG00000075394 10090 + 15:103034395-103036852 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100164 0.530±0.27 3.314±0.40 0.094±0.01 1.921±1.48 0.699±0.43 0.122±0.08 0.016±0.00 0.412±0.15 0.088±0.08 0.159±0.01 0.791±0.29 1.905±0.86 0.205±0.13 0.080±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IMP anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048562 IMP embryonic organ morphogenesis
GO:0051216 IMP cartilage development
GO:0071837 IPI HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000103132 hoxc4a-001 protein_coding Danio_rerio 0 433
ENST00000303406 HOXC4-001 protein_coding Homo_sapiens 0 1491
ENST00000430889 HOXC4-003 protein_coding Homo_sapiens 0 1716

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