C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB11B, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000077450 Rab11b 10090 - 17:33742484-33760530 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057373 Rab11b-001 33742484-33760530 protein_coding
  ENSMUST00000172894 Rab11b-005 33746833-33749845 protein_coding
  ENSMUST00000173860 Rab11b-002 33746750-33760306 protein_coding
  ENSMUST00000173987 Rab11b-004 33747414-33760280 nonsense_mediated_decay
  ENSMUST00000174744 Rab11b-003 33748958-33760484 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057373ENSMUST00000172894ENSMUST00000173860ENSMUST00000173987
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057373 7.859±0.69 29.880±8.37 8.353±0.91 7.505±3.61 12.067±4.42 10.248±0.91 6.407±0.35 6.957±1.45 4.673±1.34 15.005±1.21 1.497±0.26 14.121±6.58 3.166±0.87 2.222±1.12
ENSMUST00000172894 N/A N/A N/A 38.326±0.00 N/A N/A N/A N/A N/A N/A 10.192±0.34 41.911±12.15 22.201±4.26 13.248±0.00
ENSMUST00000173860 103.676±4.17 164.660±14.66 75.400±2.12 95.247±61.10 129.604±40.69 140.945±18.39 92.256±15.89 92.914±12.41 64.192±12.04 141.684±11.08 19.124±6.76 164.613±64.04 27.681±15.65 45.030±21.72
ENSMUST00000173987 48.954±5.40 N/A 38.591±2.53 53.720±28.52 N/A N/A 46.675±4.53 31.374±0.79 26.749±6.57 N/A 12.248±1.48 81.131±29.54 20.495±3.89 38.587±3.58

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001881 IMP receptor recycling
GO:0003924 IMP GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA GTP binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006184 IMP GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008021 ISS synaptic vesicle
GO:0015031 IEA protein transport
GO:0016023 ISO cytoplasmic membrane-bounded vesicle
GO:0019003 ISS GDP binding
GO:0030054 IEA cell junction
GO:0031489 IEA myosin V binding
GO:0032402 IMP melanosome transport
GO:0033572 IMP transferrin transport
GO:0035773 IMP insulin secretion involved in cellular response to glucose stimulus
GO:0044070 ISS regulation of anion transport
GO:0045054 ISS constitutive secretory pathway
GO:0045055 IMP regulated secretory pathway
GO:0045335 ISS phagocytic vesicle
GO:0055037 IDA recycling endosome
GO:0055038 IDA recycling endosome membrane
GO:0070062 IEA extracellular vesicular exosome
GO:0071468 ISS cellular response to acidic pH
GO:0090150 IEA establishment of protein localization to membrane
GO:1990126 ISS retrograde transport, endosome to plasma membrane
GO:2000008 ISS regulation of protein localization to cell surface
GO:2001135 IMP regulation of endocytic recycling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023324 rab11bb RAB11B, member RAS oncogene family, b protein_coding Danio_rerio
ENSDARG00000090086 rab11bb RAB11B, member RAS oncogene family, b protein_coding Danio_rerio
ENSG00000185236 RAB11B RAB11B, member RAS oncogene family protein_coding Homo_sapiens

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