C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173987 Rab11b-004 ENSMUSG00000077450 10090 - 17:33747414-33760280 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000173987
Transcript ID Adipose Bladder Brain Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000173987 48.954±5.40 38.591±2.53 53.720±28.52 46.675±4.53 31.374±0.79 26.749±6.57 12.248±1.48 81.131±29.54 20.495±3.89 38.587±3.58

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016023 ISO cytoplasmic membrane-bounded vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000061366 rab11ba-001 protein_coding Danio_rerio 0 534
ENSDART00000060766 rab11a-001 protein_coding Danio_rerio 0 514
ENSDART00000133793 rab11ba-002 protein_coding Danio_rerio 0 488
ENSDART00000148739 rab11ba-003 retained_intron Danio_rerio 2.99878e-43 180
ENST00000328024 RAB11B-001 protein_coding Homo_sapiens 0 907
ENST00000594216 RAB11B-002 protein_coding Homo_sapiens 0 734
ENST00000598706 RAB11B-003 retained_intron Homo_sapiens 0 363
ENST00000600719 RAB11B-004 protein_coding Homo_sapiens 0 606
ENST00000601897 RAB11B-005 protein_coding Homo_sapiens 0 375

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