C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11B, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057373 Rab11b-001 ENSMUSG00000077450 10090 - 17:33742484-33760530 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057373
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057373 7.859±0.69 29.880±8.37 8.353±0.91 7.505±3.61 12.067±4.42 10.248±0.91 6.407±0.35 6.957±1.45 4.673±1.34 15.005±1.21 1.497±0.26 14.121±6.58 3.166±0.87 2.222±1.12

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001881 IMP receptor recycling
GO:0003924 IMP GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA GTP binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006184 IMP GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008021 ISS synaptic vesicle
GO:0016023 ISO cytoplasmic membrane-bounded vesicle
GO:0019003 ISS GDP binding
GO:0030054 IEA cell junction
GO:0031489 IEA myosin V binding
GO:0032402 IMP melanosome transport
GO:0033572 IMP transferrin transport
GO:0035773 IMP insulin secretion involved in cellular response to glucose stimulus
GO:0044070 ISS regulation of anion transport
GO:0045054 ISS constitutive secretory pathway
GO:0045055 IMP regulated secretory pathway
GO:0045335 ISS phagocytic vesicle
GO:0055037 IDA recycling endosome
GO:0055038 IDA recycling endosome membrane
GO:0070062 IEA extracellular vesicular exosome
GO:0071468 ISS cellular response to acidic pH
GO:0090150 IEA establishment of protein localization to membrane
GO:1990126 ISS retrograde transport, endosome to plasma membrane
GO:2000008 ISS regulation of protein localization to cell surface
GO:2001135 IMP regulation of endocytic recycling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000061366 rab11ba-001 protein_coding Danio_rerio 0 556
ENSDART00000060766 rab11a-001 protein_coding Danio_rerio 0 520
ENSDART00000133793 rab11ba-002 protein_coding Danio_rerio 0 510
ENSDART00000148739 rab11ba-003 retained_intron Danio_rerio 1.99965e-42 180
ENST00000328024 RAB11B-001 protein_coding Homo_sapiens 0 1094
ENST00000594216 RAB11B-002 protein_coding Homo_sapiens 0 778
ENST00000598706 RAB11B-003 retained_intron Homo_sapiens 0 429
ENST00000600719 RAB11B-004 protein_coding Homo_sapiens 0 640
ENST00000601897 RAB11B-005 protein_coding Homo_sapiens 0 409

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