C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 47
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078622 Ccdc47 10090 - 11:106197408-106216344 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002043 Ccdc47-001 106197408-106216344 protein_coding
  ENSMUST00000106865 Ccdc47-003 106200779-106204428 protein_coding
  ENSMUST00000125383 Ccdc47-005 106201618-106205435 protein_coding
  ENSMUST00000137915 Ccdc47-004 106202005-106202905 protein_coding
  ENSMUST00000153982 Ccdc47-002 106204293-106205542 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002043ENSMUST00000106865ENSMUST00000137915
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002043 7.058±1.32 11.091±1.98 15.895±2.67 15.103±2.06 6.584±1.18 4.268±1.32 8.893±0.68 8.731±1.17 9.524±3.09 12.707±1.46 10.030±3.89 7.655±4.28 11.691±4.17 5.133±1.08
ENSMUST00000106865 N/A N/A N/A 85.544±0.00 N/A N/A N/A N/A N/A N/A N/A 102.736±0.00 116.939±5.06 48.256±0.00
ENSMUST00000137915 N/A N/A N/A 123.478±0.00 N/A N/A N/A N/A N/A N/A N/A 177.642±0.00 154.794±41.76 142.212±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006Q3 CIL_0006Q3_0002 CGP 11:106197408-106249139

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0005509 IDA calcium ion binding
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0006983 IMP ER overload response
GO:0009791 IMP post-embryonic development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0044822 IEA poly(A) RNA binding
GO:0055074 IMP calcium ion homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054362 ccdc47 coiled-coil domain containing 47 protein_coding Danio_rerio
ENSG00000108588 CCDC47 coiled-coil domain containing 47 protein_coding Homo_sapiens

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