C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 47
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002043 Ccdc47-001 ENSMUSG00000078622 10090 - 11:106197408-106216344 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002043
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002043 7.058±1.32 11.091±1.98 15.895±2.67 15.103±2.06 6.584±1.18 4.268±1.32 8.893±0.68 8.731±1.17 9.524±3.09 12.707±1.46 10.030±3.89 7.655±4.28 11.691±4.17 5.133±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006Q3 CIL_0006Q3_0002 CGP 11:106197408-106249139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0005509 IDA calcium ion binding
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0006983 IMP ER overload response
GO:0009791 IMP post-embryonic development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0044822 IEA poly(A) RNA binding
GO:0055074 IMP calcium ion homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225726 CCDC47-001 protein_coding Homo_sapiens 0 2625
ENST00000403162 CCDC47-002 protein_coding Homo_sapiens 0 2198
ENST00000582252 CCDC47-003 protein_coding Homo_sapiens 0 1964
ENST00000582331 CCDC47-006 retained_intron Homo_sapiens 0 778
ENST00000612558 CCDC47-201 protein_coding Homo_sapiens 0 1746

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