C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 47
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108588 CCDC47 9606 - 17:63745250-63776351 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000225726 CCDC47-001 63745250-63773775 protein_coding
  ENST00000403162 CCDC47-002 63746403-63773570 protein_coding
  ENST00000580986 CCDC47-005 63766119-63776351 protein_coding
  ENST00000582252 CCDC47-003 63751770-63773570 protein_coding
  ENST00000582331 CCDC47-006 63752780-63761537 retained_intron
  ENST00000584112 CCDC47-007 63765760-63773564 retained_intron
  ENST00000612558 CCDC47-201 63746427-63764793 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000225726ENST00000403162ENST00000582252ENST00000612558
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000225726 18.076±0.00 22.971±0.00 N/A 17.159±8.89 11.933±7.72 12.958±7.95 5.157±3.15 16.624±8.63 10.062±5.32 13.335±6.60 7.165±0.00 21.323±9.39 23.511±6.33 25.650±1.55
ENST00000403162 N/A N/A N/A N/A N/A N/A 11.795±0.00 N/A N/A N/A 19.637±0.00 N/A N/A N/A
ENST00000582252 N/A N/A 9.069±0.00 N/A 7.152±0.00 N/A 3.423±0.00 8.789±0.00 9.592±0.00 11.059±0.00 N/A N/A N/A N/A
ENST00000612558 N/A N/A 13.534±0.00 19.434±4.50 13.976±0.00 14.806±0.54 10.783±5.59 20.565±0.46 11.803±0.90 16.193±0.53 15.030±7.43 15.278±0.00 17.549±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0001 VISTA 17:63374232-63977730
CIL_0006Q3 CIL_0006Q3_0001 CGP 17:63745250-63819317

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0006983 IEA ER overload response
GO:0009791 IEA post-embryonic development
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0044822 IDA poly(A) RNA binding
GO:0055074 IEA calcium ion homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054362 ccdc47 coiled-coil domain containing 47 protein_coding Danio_rerio
ENSMUSG00000078622 Ccdc47 coiled-coil domain containing 47 protein_coding Mus_musculus

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