C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 25 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042477 Vps25-001 ENSMUSG00000078656 10090 + 11:101253707-101259549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000042477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000042477 46.875±6.72 29.831±6.97 36.619±0.47 27.445±7.44 40.526±6.11 25.088±4.24 31.274±4.01 45.546±2.58 35.013±6.74 29.581±2.05 33.438±9.12 44.847±24.87 13.992±1.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IN CIL_0004IN_0002 CGP 11:101191115-101259546
CIL_0004JZ CIL_0004JZ_0002 CGP 11:101246028-101259549
CIL_0004HC CIL_0004HC_0002 CGP 11:101253707-101277409

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253794 VPS25-001 protein_coding Homo_sapiens 0 1323
ENST00000455691 VPS25P1-001 processed_pseudogene Homo_sapiens 0 411
ENST00000589219 VPS25-006 retained_intron Homo_sapiens 0 409
ENST00000589520 VPS25-005 protein_coding Homo_sapiens 0 438
ENST00000589577 VPS25-004 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000590339 VPS25-002 protein_coding Homo_sapiens 0 584
ENST00000591584 VPS25-003 retained_intron Homo_sapiens 0 348

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