C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin related protein 2/3 complex, subunit 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079426 Arpc4 10090 + 6:113378113-113390448 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102708 Arpc4-002 113378147-113389652 processed_transcript
  ENSMUST00000138722 Arpc4-003 113378570-113389015 processed_transcript
  ENSMUST00000156898 Arpc4-001 113378115-113390448 protein_coding
  ENSMUST00000171058 Arpc4-201 113378113-113390447 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000102708ENSMUST00000138722ENSMUST00000156898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000102708 15.884±1.82 16.931±1.66 20.300±3.94 33.958±4.94 19.909±7.99 28.227±1.74 4.445±0.95 21.937±0.63 22.306±10.84 17.973±0.97 5.660±1.85 25.406±5.67 59.224±32.64
ENSMUST00000138722 32.723±8.50 N/A 24.971±0.53 17.451±2.70 24.951±2.21 N/A 8.212±1.36 20.447±0.33 8.283±0.00 N/A 6.765±2.28 41.559±17.39 61.892±40.51
ENSMUST00000156898 32.513±4.68 45.975±6.79 24.066±0.50 15.465±8.78 37.640±21.06 58.982±8.03 7.055±2.90 30.826±11.30 14.314±4.03 33.552±6.73 2.510±0.57 34.311±10.83 26.645±15.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WP CIL_0002WP_0002 CGP 6:113366025-113390448
CIL_0005IQ CIL_0005IQ_0002 CGP 6:113378113-113414583

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005885 TAS Arp2/3 protein complex
GO:0019899 IEA enzyme binding
GO:0030041 IEA actin filament polymerization
GO:0030674 IEA protein binding, bridging
GO:0034314 IEA Arp2/3 complex-mediated actin nucleation
GO:0042995 IEA cell projection
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054063 arpc4 actin related protein 2/3 complex, subunit 4 protein_coding Danio_rerio
ENSDARG00000058225 arpc4l actin related protein 2/3 complex, subunit 4, like protein_coding Danio_rerio
ENSG00000241553 ARPC4 actin related protein 2/3 complex, subunit 4, 20kDa protein_coding Homo_sapiens

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