C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin related protein 2/3 complex, subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102708 Arpc4-002 ENSMUSG00000079426 10090 + 6:113378147-113389652 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000102708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000102708 15.884±1.82 16.931±1.66 20.300±3.94 33.958±4.94 19.909±7.99 28.227±1.74 4.445±0.95 21.937±0.63 22.306±10.84 17.973±0.97 5.660±1.85 25.406±5.67 59.224±32.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WP CIL_0002WP_0002 CGP 6:113366025-113390448
CIL_0005IQ CIL_0005IQ_0002 CGP 6:113378113-113414583

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081062 arpc4l-201 protein_coding Danio_rerio 0 364
ENSDART00000123665 arpc4l-001 protein_coding Danio_rerio 0 364
ENST00000397256 ARPC4-TTLL3-001 protein_coding Homo_sapiens 0 303
ENST00000397261 ARPC4-001 protein_coding Homo_sapiens 0 1011
ENST00000417500 ARPC4-003 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000418163 ARPC4-TTLL3-003 nonsense_mediated_decay Homo_sapiens 0 239
ENST00000424442 ARPC4-TTLL3-005 nonsense_mediated_decay Homo_sapiens 0 538
ENST00000433034 ARPC4-010 protein_coding Homo_sapiens 0 850
ENST00000440787 ARPC4-002 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000453882 ARPC4-TTLL3-002 protein_coding Homo_sapiens 0 237
ENST00000467289 ARPC4-008 retained_intron Homo_sapiens 0 536
ENST00000485273 ARPC4-009 protein_coding Homo_sapiens 0 536
ENST00000498623 ARPC4-005 protein_coding Homo_sapiens 0 717

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