C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079641 Rpl39 10090 - X:37082520-37085402 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000115231 Rpl39-001 37082520-37085402 protein_coding
  ENSMUST00000131149 Rpl39-003 37084537-37085156 retained_intron
  ENSMUST00000138799 Rpl39-002 37083643-37085166 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115231
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115231 40.745±11.41 3.014±0.60 448.639±25.16 117.111±43.21 44.162±28.12 30.694±12.89 26.878±1.90 43.595±10.73 230.220±231.42 28.361±1.74 152.166±15.06 127.236±231.27 318.293±113.76 7.642±2.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000176 CIL_000176_0003 CGP X:37048845-37085402
CIL_000175 CIL_000175_0003 CGP X:37082520-37110322

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002227 IEA innate immune response in mucosa
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0005615 IEA extracellular space
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0019731 IEA antibacterial humoral response
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0050830 IEA defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036316 rpl39 ribosomal protein L39 protein_coding Danio_rerio
ENSG00000198918 RPL39 ribosomal protein L39 protein_coding Homo_sapiens

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