C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138799 Rpl39-002 ENSMUSG00000079641 10090 - X:37083643-37085166 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000176 CIL_000176_0003 CGP X:37048845-37085402
CIL_000175 CIL_000175_0003 CGP X:37082520-37110322

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273411 RPL39P5-002 processed_transcript Homo_sapiens 2e-36 156
ENST00000296277 RPL39L-002 protein_coding Homo_sapiens 6e-34 148
ENST00000361575 RPL39-001 protein_coding Homo_sapiens 1.4013e-45 185
ENST00000409627 SUMO1-006 nonsense_mediated_decay Homo_sapiens 0.000000006 66
ENST00000416137 RP3-522D1.2-001 processed_pseudogene Homo_sapiens 1e-29 132
ENST00000422215 RP11-307O1.1-001 processed_pseudogene Homo_sapiens 1e-29 132
ENST00000423619 RP11-54O7.10-001 processed_pseudogene Homo_sapiens 8e-36 152
ENST00000424573 RPL39P3-001 processed_pseudogene Homo_sapiens 2e-36 154
ENST00000426171 RP11-415H23.4-001 processed_pseudogene Homo_sapiens 5e-23 110
ENST00000433055 RPL39L-003 protein_coding Homo_sapiens 6e-34 148
ENST00000439897 RP11-91I11.1-001 processed_pseudogene Homo_sapiens 2e-31 137
ENST00000441819 AC069257.6-001 processed_pseudogene Homo_sapiens 6e-27 122
ENST00000443146 AC004920.2-001 processed_pseudogene Homo_sapiens 1e-23 111
ENST00000447385 AC020550.7-001 processed_pseudogene Homo_sapiens 5e-28 126
ENST00000447779 RPL39P29-001 processed_pseudogene Homo_sapiens 7e-17 90
ENST00000449384 RPL39P25-001 processed_pseudogene Homo_sapiens 3e-30 134
ENST00000453523 AC079354.6-001 processed_pseudogene Homo_sapiens 4e-34 147
ENST00000455270 RPL39L-001 protein_coding Homo_sapiens 5e-34 148
ENST00000455840 RP3-481F12.1-001 processed_pseudogene Homo_sapiens 2e-21 104
ENST00000459631 CTD-3141N22.1-001 transcribed_processed_pseudogene Homo_sapiens 1e-24 115
ENST00000465012 RP11-178L8.1-001 processed_pseudogene Homo_sapiens 2e-36 154
ENST00000467003 ZNF525-001 protein_coding Homo_sapiens 5e-28 132
ENST00000468844 RPL39-002 processed_transcript Homo_sapiens 4e-34 150
ENST00000475179 ZNF525-003 protein_coding Homo_sapiens 2e-28 132
ENST00000480211 RP11-318G8.1-001 processed_pseudogene Homo_sapiens 5e-33 143
ENST00000490784 RPL39P36-001 processed_pseudogene Homo_sapiens 2e-26 121
ENST00000495111 RP11-1094M14.1-001 processed_pseudogene Homo_sapiens 5e-28 126
ENST00000512505 RPL39P5-001 transcribed_processed_pseudogene Homo_sapiens 3e-35 150
ENST00000543629 LMNTD1-011 protein_coding Homo_sapiens 1e-25 121
ENST00000624073 ZNF525-201 protein_coding Homo_sapiens 5e-28 126

Loading