C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A11, opposite strand
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000086427 Hoxa11os 10090 + 6:52244393-52249799 processed_transcript
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000134512 Hoxa11os-001 52245243-52249769 antisense
  ENSMUST00000137729 Hoxa11os-005 52246221-52249380 retained_intron
  ENSMUST00000141850 Hoxa11os-002 52245989-52249790 antisense
  ENSMUST00000147174 Hoxa11os-003 52245969-52249795 antisense
  ENSMUST00000154027 Hoxa11os-004 52248422-52249799 antisense
  ENSMUST00000156515 Hoxa11os-006 52244393-52249791 antisense

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000134512ENSMUST00000137729ENSMUST00000141850ENSMUST00000147174ENSMUST00000154027ENSMUST00000156515
Transcript ID Adipose Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000134512 31.763±0.75 18.298±0.57 0.016±0.00 N/A 0.734±0.07 0.016±0.00 N/A 1.349±0.05 1.666±0.93 1.259±0.55 0.039±0.00
ENSMUST00000137729 2.017±0.00 28.541±4.86 0.069±0.04 67.636±5.90 N/A 0.076±0.02 0.283±0.00 N/A 2.411±0.23 3.407±0.00 0.336±0.00
ENSMUST00000141850 N/A 18.338±0.00 N/A N/A N/A 0.015±0.01 N/A 2.016±0.11 N/A 0.635±0.00 0.119±0.05
ENSMUST00000147174 N/A N/A N/A N/A N/A 0.138±0.01 N/A 2.255±0.69 N/A N/A 0.257±0.00
ENSMUST00000154027 N/A N/A N/A N/A N/A N/A N/A N/A 0.402±0.30 1.331±0.00 N/A
ENSMUST00000156515 N/A 13.374±1.41 N/A N/A N/A 0.042±0.00 N/A N/A 0.988±0.34 N/A 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003P7 CIL_0003P7_0002 CGP 6:52231197-52245810
CIL_0003P8 CIL_0003P8_0002 CGP 6:52242106-52260880

Gene Ontology

No GO terms available.

Homologs

No Homologs available.

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