C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein E
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000090553 Snrpe 10090 - 1:133603871-133610291 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000164096 Snrpe-002 133606087-133610249 protein_coding
  ENSMUST00000164574 Snrpe-004 133608861-133610215 protein_coding
  ENSMUST00000166291 Snrpe-003 133603876-133610232 protein_coding
  ENSMUST00000166915 Snrpe-001 133603871-133610291 protein_coding
  ENSMUST00000171264 Snrpe-007 133606523-133609925 protein_coding
  ENSMUST00000172079 Snrpe-005 133603896-133610047 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164096ENSMUST00000164574ENSMUST00000166915ENSMUST00000172079
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164096 N/A 0.282±0.00 N/A N/A 1.792±0.28 N/A N/A N/A N/A 2.243±0.00 N/A N/A N/A N/A
ENSMUST00000164574 N/A 0.867±0.31 N/A N/A 0.718±0.00 1.008±0.22 N/A N/A N/A N/A N/A 0.574±0.05 N/A N/A
ENSMUST00000166915 29.710±11.37 3.595±1.28 79.064±35.02 161.919±44.26 15.465±4.45 14.789±3.53 22.583±2.62 28.334±7.25 133.271±132.58 24.168±6.23 28.232±2.91 67.039±121.54 330.510±340.39 48.128±36.41
ENSMUST00000172079 N/A 1.045±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0002 VISTA 1:133249313-133850886
CIL_00096T CIL_00096T_0002 VISTA 1:133444227-134045719

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005681 IEA spliceosomal complex
GO:0005683 ISS U7 snRNP
GO:0005685 ISS U1 snRNP
GO:0005687 ISS U4 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0005829 ISS cytosol
GO:0034709 ISS methylosome
GO:0034715 ISS pICln-Sm protein complex
GO:0034719 ISS SMN-Sm protein complex
GO:0042633 ISS hair cycle
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033175 snrpe small nuclear ribonucleoprotein polypeptide E protein_coding Danio_rerio
ENSG00000182004 SNRPE small nuclear ribonucleoprotein polypeptide E protein_coding Homo_sapiens

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