C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide E
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182004 SNRPE 9606 + 1:203861603-203870550 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367208 SNRPE-004 203863625-203870051 protein_coding
  ENST00000414487 SNRPE-001 203861615-203870550 protein_coding
  ENST00000469451 SNRPE-003 203861850-203865119 processed_transcript
  ENST00000470492 SNRPE-006 203861609-203870077 processed_transcript
  ENST00000475035 SNRPE-005 203861603-203870084 processed_transcript
  ENST00000483099 SNRPE-002 203861603-203870081 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367208ENST00000414487ENST00000470492ENST00000475035ENST00000483099
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.207±21.52 34.121±5.34 N/A
ENST00000414487 N/A 5.156±0.00 4.077±0.00 11.198±0.00 9.560±0.00 5.385±1.46 3.400±2.10 5.915±0.29 6.778±4.52 4.061±2.28 3.490±2.09 11.835±0.85 12.802±3.13 4.720±0.61
ENST00000470492 31.419±0.00 60.219±0.00 1.876±0.00 10.231±0.00 44.057±0.00 43.872±0.00 N/A N/A N/A N/A 1.726±0.00 N/A N/A 48.783±0.00
ENST00000475035 15.893±0.00 13.134±0.00 N/A 17.882±0.00 10.198±0.00 14.786±0.00 11.282±0.00 24.725±0.00 18.970±0.00 19.192±0.00 11.103±0.00 36.140±12.07 15.215±8.26 17.780±5.16
ENST00000483099 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.554±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0001 VISTA 1:203391843-203993678
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984
CIL_0000TU CIL_0000TU_0002 CGP 1:203861603-204127743

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 NAS spliceosomal complex assembly
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IEA spliceosomal complex
GO:0005683 IDA U7 snRNP
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005829 IDA cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0030532 NAS small nuclear ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034715 IDA pICln-Sm protein complex
GO:0034719 IDA SMN-Sm protein complex
GO:0042633 IMP hair cycle
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033175 snrpe small nuclear ribonucleoprotein polypeptide E protein_coding Danio_rerio
ENSMUSG00000090553 Snrpe small nuclear ribonucleoprotein E protein_coding Mus_musculus

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