C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180353 Sox1-001 ENSMUSG00000096014 10090 + 8:12395295-12400126 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartLiverLungOvaryPlacentaTestisENSMUST00000180353
Transcript ID Adrenal Brain Colon Heart Liver Lung Ovary Placenta Testis
ENSMUST00000180353 0.012±0.01 8.552±5.00 0.055±0.01 0.006±0.00 0.029±0.04 0.005±0.00 0.013±0.00 0.004±0.00 0.717±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SC CIL_0008SC_0002 VISTA 8:12162372-12763356
CIL_0007MI CIL_0007MI_0002 UCNEbase 8:12327809-12463108

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001046 IEA core promoter sequence-specific DNA binding
GO:0001764 IMP neuron migration
GO:0002089 IMP lens morphogenesis in camera-type eye
GO:0003677 IDA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0021521 IMP ventral spinal cord interneuron specification
GO:0021879 IMP forebrain neuron differentiation
GO:0021884 IMP forebrain neuron development
GO:0030900 IMP forebrain development
GO:0043565 IDA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000104493 sox2-001 protein_coding Danio_rerio 0 259
ENSDART00000075617 sox3-001 protein_coding Danio_rerio 0 246
ENSDART00000058910 sox19b-001 protein_coding Danio_rerio 0 204
ENSDART00000049339 sox21a-001 protein_coding Danio_rerio 9.94922e-44 183
ENST00000245479 SOX9-001 protein_coding Homo_sapiens 7e-20 104
ENST00000306087 SOX14-001 protein_coding Homo_sapiens 0 302
ENST00000325404 SOX2-001 protein_coding Homo_sapiens 0 359
ENST00000330949 SOX1-001 protein_coding Homo_sapiens 0 2119
ENST00000340356 SOX18-001 protein_coding Homo_sapiens 7e-17 94
ENST00000360880 SOX10-001 protein_coding Homo_sapiens 0.00000002 66
ENST00000370536 SOX3-001 protein_coding Homo_sapiens 0 313
ENST00000376945 SOX21-001 protein_coding Homo_sapiens 0 318
ENST00000396884 SOX10-002 protein_coding Homo_sapiens 0.00000002 66
ENST00000427770 SOX10-003 protein_coding Homo_sapiens 0.000000007 66

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