Institute of Cardiovascular Regeneration Webtool Repository

CIL_0007MI_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
SOX1	UCNEbase	9606	13:111976795-112139574
Gene	Transcript	Position	Biotype
ENSG00000182968 (SOX1) SRY (sex determining region Y)-box 1	ENST00000330949 (SOX1-001)	112067647-112070488	protein_coding
ENSG00000224243 (LINC00403) long intergenic non-protein coding RNA 403	ENST00000421423 (LINC00403-001)	112107119-112108015	lincRNA
ENSG00000229520 (LINC00404) long intergenic non-protein coding RNA 404	ENST00000418660 (LINC00404-001)	112106095-112106882	lincRNA
ENSG00000260385 (RP11-450H6.3)	ENST00000567967 (RP11-450H6.3-001)	112083549-112085471	lincRNA

CIL_0007MI_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
SOX1	UCNEbase	10090	8:12327809-12463108
Gene	Transcript	Position	Biotype
ENSMUSG00000047935 (Gm5607) predicted gene 5607	ENSMUST00000080795 (Gm5607-201)	12385771-12436729	sense_overlapping
ENSMUSG00000047935 (Gm5607) predicted gene 5607	ENSMUST00000186174 (Gm5607-001)	12385771-12436750	sense_overlapping
ENSMUSG00000089234 (Gm22207) predicted gene, 22207	ENSMUST00000158609 (Gm22207-201)	12356153-12356469	misc_RNA
ENSMUSG00000096014 (Sox1) SRY (sex determining region Y)-box 1	ENSMUST00000180353 (Sox1-001)	12395295-12400126	protein_coding

CIL_0007MI_0003 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
SOX1	UCNEbase	7955	1:46671857-46695703
Gene	Transcript	Position	Biotype
ENSDARG00000008131 (sox1b) SRY-box containing gene 1b	ENSDART00000010894 (sox1b-001)	46691440-46693214	protein_coding

CIL_0007MI_0004 (Click to Hide/Show)

Notice (8): Undefined index: CIL_0007MI_0004 [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007MI_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MI_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MI_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000182968' => 'SRY (sex determining region Y)-box 1',
		'ENSG00000200072' => 'Small nucleolar RNA SNORD44',
		'ENSG00000224243' => 'long intergenic non-protein coding RNA 403',
		'ENSG00000229520' => 'long intergenic non-protein coding RNA 404',
		'ENSG00000260385' => null,
		'ENSMUSG00000047935' => 'predicted gene 5607',
		'ENSMUSG00000089234' => 'predicted gene, 22207',
		'ENSMUSG00000092656' => 'predicted gene, 25239',
		'ENSMUSG00000096014' => 'SRY (sex determining region Y)-box 1',
		'ENSDARG00000008131' => 'SRY-box containing gene 1b'
	),
	'gene_name_arr' => array(
		'ENSG00000182968' => 'SOX1',
		'ENSG00000200072' => 'SNORD44',
		'ENSG00000224243' => 'LINC00403',
		'ENSG00000229520' => 'LINC00404',
		'ENSG00000260385' => 'RP11-450H6.3',
		'ENSMUSG00000047935' => 'Gm5607',
		'ENSMUSG00000089234' => 'Gm22207',
		'ENSMUSG00000092656' => 'Gm25239',
		'ENSMUSG00000096014' => 'Sox1',
		'ENSDARG00000008131' => 'sox1b'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 2 => 'Adrenal',
		(int) 7 => 'Bladder',
		(int) 9 => 'Brain',
		(int) 16 => 'Breast',
		(int) 19 => 'Colon',
		(int) 25 => 'Heart',
		(int) 31 => 'Kidney',
		(int) 34 => 'Liver',
		(int) 37 => 'Lung',
		(int) 40 => 'Muscle',
		(int) 41 => 'Ovary',
		(int) 45 => 'Placenta',
		(int) 48 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 11,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000330949' => array(
			'start' => '112067647',
			'end' => '112070488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'SOX1-001'
		),
		'ENST00000363202' => array(
			'start' => '112052078',
			'end' => '112052138',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'SNORD44.1-201'
		),
		'ENST00000421423' => array(
			'start' => '112107119',
			'end' => '112108015',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00403-001'
		),
		'ENST00000418660' => array(
			'start' => '112106095',
			'end' => '112106882',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00404-001'
		),
		'ENST00000567967' => array(
			'start' => '112083549',
			'end' => '112085471',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-450H6.3-001'
		),
		'ENSMUST00000080795' => array(
			'start' => '12385771',
			'end' => '12436729',
			'transcript_biotype' => 'sense_overlapping',
			'transcript_name' => 'Gm5607-201'
		),
		'ENSMUST00000186174' => array(
			'start' => '12385771',
			'end' => '12436750',
			'transcript_biotype' => 'sense_overlapping',
			'transcript_name' => 'Gm5607-001'
		),
		'ENSMUST00000158609' => array(
			'start' => '12356153',
			'end' => '12356469',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'Gm22207-201'
		),
		'ENSMUST00000174915' => array(
			'start' => '12396403',
			'end' => '12396488',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm25239-201'
		),
		'ENSMUST00000180353' => array(
			'start' => '12395295',
			'end' => '12400126',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Sox1-001'
		),
		'ENSDART00000010894' => array(
			'start' => '46691440',
			'end' => '46693214',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'sox1b-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007MI_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MI_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MI_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007MI_0001' => array(
		'genes_in_region' => array(
			'ENSG00000182968' => array(
				[maximum depth reached]
			),
			'ENSG00000224243' => array(
				[maximum depth reached]
			),
			'ENSG00000229520' => array(
				[maximum depth reached]
			),
			'ENSG00000260385' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Brain',
			(int) 2 => 'Breast',
			(int) 3 => 'Colon',
			(int) 4 => 'Ovary',
			(int) 5 => 'Testis',
			(int) 6 => 'Adrenal',
			(int) 7 => 'Colon',
			(int) 8 => 'Testis',
			(int) 9 => 'Colon',
			(int) 10 => 'Heart',
			(int) 11 => 'Testis',
			(int) 12 => 'Brain',
			(int) 13 => 'Heart',
			(int) 14 => 'Testis'
		)
	),
	'CIL_0007MI_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000047935' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000089234' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096014' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Adipose',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Bladder',
			(int) 16 => 'Brain',
			(int) 17 => 'Breast',
			(int) 18 => 'Colon',
			(int) 19 => 'Heart',
			(int) 20 => 'Kidney',
			(int) 21 => 'Liver',
			(int) 22 => 'Lung',
			(int) 23 => 'Ovary',
			(int) 24 => 'Placenta',
			(int) 25 => 'Testis',
			(int) 26 => 'Brain',
			(int) 27 => 'Adrenal',
			(int) 28 => 'Brain',
			(int) 29 => 'Colon',
			(int) 30 => 'Heart',
			(int) 31 => 'Liver',
			(int) 32 => 'Lung',
			(int) 33 => 'Ovary',
			(int) 34 => 'Placenta',
			(int) 35 => 'Testis'
		)
	),
	'CIL_0007MI_0003' => array(
		'genes_in_region' => array(
			'ENSDARG00000008131' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Muscle'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000182968' => 'SRY (sex determining region Y)-box 1',
	'ENSG00000200072' => 'Small nucleolar RNA SNORD44',
	'ENSG00000224243' => 'long intergenic non-protein coding RNA 403',
	'ENSG00000229520' => 'long intergenic non-protein coding RNA 404',
	'ENSG00000260385' => null,
	'ENSMUSG00000047935' => 'predicted gene 5607',
	'ENSMUSG00000089234' => 'predicted gene, 22207',
	'ENSMUSG00000092656' => 'predicted gene, 25239',
	'ENSMUSG00000096014' => 'SRY (sex determining region Y)-box 1',
	'ENSDARG00000008131' => 'SRY-box containing gene 1b'
)
$gene_name_arr = array(
	'ENSG00000182968' => 'SOX1',
	'ENSG00000200072' => 'SNORD44',
	'ENSG00000224243' => 'LINC00403',
	'ENSG00000229520' => 'LINC00404',
	'ENSG00000260385' => 'RP11-450H6.3',
	'ENSMUSG00000047935' => 'Gm5607',
	'ENSMUSG00000089234' => 'Gm22207',
	'ENSMUSG00000092656' => 'Gm25239',
	'ENSMUSG00000096014' => 'Sox1',
	'ENSDARG00000008131' => 'sox1b'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MI_0001',
			'tax_id' => '9606',
			'chromosome' => '13',
			'seq_start' => '111976795',
			'seq_end' => '112139574',
			'region_length' => '162779',
			'region_type' => 'UCNEbase',
			'el_id' => 'SOX1'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MI_0002',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '12327809',
			'seq_end' => '12463108',
			'region_length' => '135299',
			'region_type' => 'UCNEbase',
			'el_id' => 'SOX1'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MI_0003',
			'tax_id' => '7955',
			'chromosome' => '1',
			'seq_start' => '46671857',
			'seq_end' => '46695703',
			'region_length' => '23846',
			'region_type' => 'UCNEbase',
			'el_id' => 'SOX1'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MI_0004',
			'tax_id' => '7955',
			'chromosome' => '9',
			'seq_start' => '22760015',
			'seq_end' => '22760336',
			'region_length' => '321',
			'region_type' => 'UCNEbase',
			'el_id' => 'SOX1'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 2 => 'Adrenal',
	(int) 7 => 'Bladder',
	(int) 9 => 'Brain',
	(int) 16 => 'Breast',
	(int) 19 => 'Colon',
	(int) 25 => 'Heart',
	(int) 31 => 'Kidney',
	(int) 34 => 'Liver',
	(int) 37 => 'Lung',
	(int) 40 => 'Muscle',
	(int) 41 => 'Ovary',
	(int) 45 => 'Placenta',
	(int) 48 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 11
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000330949' => array(
		'start' => '112067647',
		'end' => '112070488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'SOX1-001'
	),
	'ENST00000363202' => array(
		'start' => '112052078',
		'end' => '112052138',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'SNORD44.1-201'
	),
	'ENST00000421423' => array(
		'start' => '112107119',
		'end' => '112108015',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00403-001'
	),
	'ENST00000418660' => array(
		'start' => '112106095',
		'end' => '112106882',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00404-001'
	),
	'ENST00000567967' => array(
		'start' => '112083549',
		'end' => '112085471',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-450H6.3-001'
	),
	'ENSMUST00000080795' => array(
		'start' => '12385771',
		'end' => '12436729',
		'transcript_biotype' => 'sense_overlapping',
		'transcript_name' => 'Gm5607-201'
	),
	'ENSMUST00000186174' => array(
		'start' => '12385771',
		'end' => '12436750',
		'transcript_biotype' => 'sense_overlapping',
		'transcript_name' => 'Gm5607-001'
	),
	'ENSMUST00000158609' => array(
		'start' => '12356153',
		'end' => '12356469',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'Gm22207-201'
	),
	'ENSMUST00000174915' => array(
		'start' => '12396403',
		'end' => '12396488',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm25239-201'
	),
	'ENSMUST00000180353' => array(
		'start' => '12395295',
		'end' => '12400126',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Sox1-001'
	),
	'ENSDART00000010894' => array(
		'start' => '46691440',
		'end' => '46693214',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'sox1b-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007MI_0001' => array(
		'genes_in_region' => array(
			'ENSG00000182968' => array(
				[maximum depth reached]
			),
			'ENSG00000224243' => array(
				[maximum depth reached]
			),
			'ENSG00000229520' => array(
				[maximum depth reached]
			),
			'ENSG00000260385' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Brain',
			(int) 2 => 'Breast',
			(int) 3 => 'Colon',
			(int) 4 => 'Ovary',
			(int) 5 => 'Testis',
			(int) 6 => 'Adrenal',
			(int) 7 => 'Colon',
			(int) 8 => 'Testis',
			(int) 9 => 'Colon',
			(int) 10 => 'Heart',
			(int) 11 => 'Testis',
			(int) 12 => 'Brain',
			(int) 13 => 'Heart',
			(int) 14 => 'Testis'
		)
	),
	'CIL_0007MI_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000047935' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000089234' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096014' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Adipose',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Bladder',
			(int) 16 => 'Brain',
			(int) 17 => 'Breast',
			(int) 18 => 'Colon',
			(int) 19 => 'Heart',
			(int) 20 => 'Kidney',
			(int) 21 => 'Liver',
			(int) 22 => 'Lung',
			(int) 23 => 'Ovary',
			(int) 24 => 'Placenta',
			(int) 25 => 'Testis',
			(int) 26 => 'Brain',
			(int) 27 => 'Adrenal',
			(int) 28 => 'Brain',
			(int) 29 => 'Colon',
			(int) 30 => 'Heart',
			(int) 31 => 'Liver',
			(int) 32 => 'Lung',
			(int) 33 => 'Ovary',
			(int) 34 => 'Placenta',
			(int) 35 => 'Testis'
		)
	),
	'CIL_0007MI_0003' => array(
		'genes_in_region' => array(
			'ENSDARG00000008131' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Muscle'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007MI_0004',
		'tax_id' => '7955',
		'chromosome' => '9',
		'seq_start' => '22760015',
		'seq_end' => '22760336',
		'region_length' => '321',
		'region_type' => 'UCNEbase',
		'el_id' => 'SOX1'
	)
)
$gene_el = array(
	'ENSDART00000010894' => array(
		'Brain' => array(
			'average_FPKM' => '2.782',
			'stddev_FPKM' => '0.94'
		),
		'Heart' => array(
			'average_FPKM' => '0.083',
			'stddev_FPKM' => '0.01'
		),
		'Kidney' => array(
			'average_FPKM' => '0.047',
			'stddev_FPKM' => '0.00'
		),
		'Muscle' => array(
			'average_FPKM' => '0.433',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSDARG00000008131'
$is_first = false
$tran_el = array(
	'Brain' => array(
		'average_FPKM' => '2.782',
		'stddev_FPKM' => '0.94'
	),
	'Heart' => array(
		'average_FPKM' => '0.083',
		'stddev_FPKM' => '0.01'
	),
	'Kidney' => array(
		'average_FPKM' => '0.047',
		'stddev_FPKM' => '0.00'
	),
	'Muscle' => array(
		'average_FPKM' => '0.433',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSDART00000010894'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context
        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0007MI_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MI_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MI_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000182968' => 'SRY (sex determining region Y)-box 1',
		'ENSG00000200072' => 'Small nucleolar RNA SNORD44',
		'ENSG00000224243' => 'long intergenic non-protein coding RNA 403',
		'ENSG00000229520' => 'long intergenic non-protein coding RNA 404',
		'ENSG00000260385' => null,
		'ENSMUSG00000047935' => 'predicted gene 5607',
		'ENSMUSG00000089234' => 'predicted gene, 22207',
		'ENSMUSG00000092656' => 'predicted gene, 25239',
		'ENSMUSG00000096014' => 'SRY (sex determining region Y)-box 1',
		'ENSDARG00000008131' => 'SRY-box containing gene 1b'
	),
	'gene_name_arr' => array(
		'ENSG00000182968' => 'SOX1',
		'ENSG00000200072' => 'SNORD44',
		'ENSG00000224243' => 'LINC00403',
		'ENSG00000229520' => 'LINC00404',
		'ENSG00000260385' => 'RP11-450H6.3',
		'ENSMUSG00000047935' => 'Gm5607',
		'ENSMUSG00000089234' => 'Gm22207',
		'ENSMUSG00000092656' => 'Gm25239',
		'ENSMUSG00000096014' => 'Sox1',
		'ENSDARG00000008131' => 'sox1b'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 2 => 'Adrenal',
		(int) 7 => 'Bladder',
		(int) 9 => 'Brain',
		(int) 16 => 'Breast',
		(int) 19 => 'Colon',
		(int) 25 => 'Heart',
		(int) 31 => 'Kidney',
		(int) 34 => 'Liver',
		(int) 37 => 'Lung',
		(int) 40 => 'Muscle',
		(int) 41 => 'Ovary',
		(int) 45 => 'Placenta',
		(int) 48 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 11,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000330949' => array(
			'start' => '112067647',
			'end' => '112070488',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'SOX1-001'
		),
		'ENST00000363202' => array(
			'start' => '112052078',
			'end' => '112052138',
			'transcript_biotype' => 'snoRNA',
			'transcript_name' => 'SNORD44.1-201'
		),
		'ENST00000421423' => array(
			'start' => '112107119',
			'end' => '112108015',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00403-001'
		),
		'ENST00000418660' => array(
			'start' => '112106095',
			'end' => '112106882',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'LINC00404-001'
		),
		'ENST00000567967' => array(
			'start' => '112083549',
			'end' => '112085471',
			'transcript_biotype' => 'lincRNA',
			'transcript_name' => 'RP11-450H6.3-001'
		),
		'ENSMUST00000080795' => array(
			'start' => '12385771',
			'end' => '12436729',
			'transcript_biotype' => 'sense_overlapping',
			'transcript_name' => 'Gm5607-201'
		),
		'ENSMUST00000186174' => array(
			'start' => '12385771',
			'end' => '12436750',
			'transcript_biotype' => 'sense_overlapping',
			'transcript_name' => 'Gm5607-001'
		),
		'ENSMUST00000158609' => array(
			'start' => '12356153',
			'end' => '12356469',
			'transcript_biotype' => 'misc_RNA',
			'transcript_name' => 'Gm22207-201'
		),
		'ENSMUST00000174915' => array(
			'start' => '12396403',
			'end' => '12396488',
			'transcript_biotype' => 'miRNA',
			'transcript_name' => 'Gm25239-201'
		),
		'ENSMUST00000180353' => array(
			'start' => '12395295',
			'end' => '12400126',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Sox1-001'
		),
		'ENSDART00000010894' => array(
			'start' => '46691440',
			'end' => '46693214',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'sox1b-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0007MI_0001' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MI_0002' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0007MI_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0007MI_0001' => array(
		'genes_in_region' => array(
			'ENSG00000182968' => array(
				[maximum depth reached]
			),
			'ENSG00000224243' => array(
				[maximum depth reached]
			),
			'ENSG00000229520' => array(
				[maximum depth reached]
			),
			'ENSG00000260385' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Brain',
			(int) 2 => 'Breast',
			(int) 3 => 'Colon',
			(int) 4 => 'Ovary',
			(int) 5 => 'Testis',
			(int) 6 => 'Adrenal',
			(int) 7 => 'Colon',
			(int) 8 => 'Testis',
			(int) 9 => 'Colon',
			(int) 10 => 'Heart',
			(int) 11 => 'Testis',
			(int) 12 => 'Brain',
			(int) 13 => 'Heart',
			(int) 14 => 'Testis'
		)
	),
	'CIL_0007MI_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000047935' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000089234' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096014' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Adipose',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Bladder',
			(int) 16 => 'Brain',
			(int) 17 => 'Breast',
			(int) 18 => 'Colon',
			(int) 19 => 'Heart',
			(int) 20 => 'Kidney',
			(int) 21 => 'Liver',
			(int) 22 => 'Lung',
			(int) 23 => 'Ovary',
			(int) 24 => 'Placenta',
			(int) 25 => 'Testis',
			(int) 26 => 'Brain',
			(int) 27 => 'Adrenal',
			(int) 28 => 'Brain',
			(int) 29 => 'Colon',
			(int) 30 => 'Heart',
			(int) 31 => 'Liver',
			(int) 32 => 'Lung',
			(int) 33 => 'Ovary',
			(int) 34 => 'Placenta',
			(int) 35 => 'Testis'
		)
	),
	'CIL_0007MI_0003' => array(
		'genes_in_region' => array(
			'ENSDARG00000008131' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Muscle'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000182968' => 'SRY (sex determining region Y)-box 1',
	'ENSG00000200072' => 'Small nucleolar RNA SNORD44',
	'ENSG00000224243' => 'long intergenic non-protein coding RNA 403',
	'ENSG00000229520' => 'long intergenic non-protein coding RNA 404',
	'ENSG00000260385' => null,
	'ENSMUSG00000047935' => 'predicted gene 5607',
	'ENSMUSG00000089234' => 'predicted gene, 22207',
	'ENSMUSG00000092656' => 'predicted gene, 25239',
	'ENSMUSG00000096014' => 'SRY (sex determining region Y)-box 1',
	'ENSDARG00000008131' => 'SRY-box containing gene 1b'
)
$gene_name_arr = array(
	'ENSG00000182968' => 'SOX1',
	'ENSG00000200072' => 'SNORD44',
	'ENSG00000224243' => 'LINC00403',
	'ENSG00000229520' => 'LINC00404',
	'ENSG00000260385' => 'RP11-450H6.3',
	'ENSMUSG00000047935' => 'Gm5607',
	'ENSMUSG00000089234' => 'Gm22207',
	'ENSMUSG00000092656' => 'Gm25239',
	'ENSMUSG00000096014' => 'Sox1',
	'ENSDARG00000008131' => 'sox1b'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MI_0001',
			'tax_id' => '9606',
			'chromosome' => '13',
			'seq_start' => '111976795',
			'seq_end' => '112139574',
			'region_length' => '162779',
			'region_type' => 'UCNEbase',
			'el_id' => 'SOX1'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MI_0002',
			'tax_id' => '10090',
			'chromosome' => '8',
			'seq_start' => '12327809',
			'seq_end' => '12463108',
			'region_length' => '135299',
			'region_type' => 'UCNEbase',
			'el_id' => 'SOX1'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MI_0003',
			'tax_id' => '7955',
			'chromosome' => '1',
			'seq_start' => '46671857',
			'seq_end' => '46695703',
			'region_length' => '23846',
			'region_type' => 'UCNEbase',
			'el_id' => 'SOX1'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0007MI_0004',
			'tax_id' => '7955',
			'chromosome' => '9',
			'seq_start' => '22760015',
			'seq_end' => '22760336',
			'region_length' => '321',
			'region_type' => 'UCNEbase',
			'el_id' => 'SOX1'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 2 => 'Adrenal',
	(int) 7 => 'Bladder',
	(int) 9 => 'Brain',
	(int) 16 => 'Breast',
	(int) 19 => 'Colon',
	(int) 25 => 'Heart',
	(int) 31 => 'Kidney',
	(int) 34 => 'Liver',
	(int) 37 => 'Lung',
	(int) 40 => 'Muscle',
	(int) 41 => 'Ovary',
	(int) 45 => 'Placenta',
	(int) 48 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 11
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000330949' => array(
		'start' => '112067647',
		'end' => '112070488',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'SOX1-001'
	),
	'ENST00000363202' => array(
		'start' => '112052078',
		'end' => '112052138',
		'transcript_biotype' => 'snoRNA',
		'transcript_name' => 'SNORD44.1-201'
	),
	'ENST00000421423' => array(
		'start' => '112107119',
		'end' => '112108015',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00403-001'
	),
	'ENST00000418660' => array(
		'start' => '112106095',
		'end' => '112106882',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'LINC00404-001'
	),
	'ENST00000567967' => array(
		'start' => '112083549',
		'end' => '112085471',
		'transcript_biotype' => 'lincRNA',
		'transcript_name' => 'RP11-450H6.3-001'
	),
	'ENSMUST00000080795' => array(
		'start' => '12385771',
		'end' => '12436729',
		'transcript_biotype' => 'sense_overlapping',
		'transcript_name' => 'Gm5607-201'
	),
	'ENSMUST00000186174' => array(
		'start' => '12385771',
		'end' => '12436750',
		'transcript_biotype' => 'sense_overlapping',
		'transcript_name' => 'Gm5607-001'
	),
	'ENSMUST00000158609' => array(
		'start' => '12356153',
		'end' => '12356469',
		'transcript_biotype' => 'misc_RNA',
		'transcript_name' => 'Gm22207-201'
	),
	'ENSMUST00000174915' => array(
		'start' => '12396403',
		'end' => '12396488',
		'transcript_biotype' => 'miRNA',
		'transcript_name' => 'Gm25239-201'
	),
	'ENSMUST00000180353' => array(
		'start' => '12395295',
		'end' => '12400126',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Sox1-001'
	),
	'ENSDART00000010894' => array(
		'start' => '46691440',
		'end' => '46693214',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'sox1b-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0007MI_0001' => array(
		'genes_in_region' => array(
			'ENSG00000182968' => array(
				[maximum depth reached]
			),
			'ENSG00000224243' => array(
				[maximum depth reached]
			),
			'ENSG00000229520' => array(
				[maximum depth reached]
			),
			'ENSG00000260385' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Brain',
			(int) 2 => 'Breast',
			(int) 3 => 'Colon',
			(int) 4 => 'Ovary',
			(int) 5 => 'Testis',
			(int) 6 => 'Adrenal',
			(int) 7 => 'Colon',
			(int) 8 => 'Testis',
			(int) 9 => 'Colon',
			(int) 10 => 'Heart',
			(int) 11 => 'Testis',
			(int) 12 => 'Brain',
			(int) 13 => 'Heart',
			(int) 14 => 'Testis'
		)
	),
	'CIL_0007MI_0002' => array(
		'genes_in_region' => array(
			'ENSMUSG00000047935' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000089234' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096014' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adipose',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Bladder',
			(int) 3 => 'Brain',
			(int) 4 => 'Breast',
			(int) 5 => 'Colon',
			(int) 6 => 'Heart',
			(int) 7 => 'Kidney',
			(int) 8 => 'Liver',
			(int) 9 => 'Lung',
			(int) 10 => 'Ovary',
			(int) 11 => 'Placenta',
			(int) 12 => 'Testis',
			(int) 13 => 'Adipose',
			(int) 14 => 'Adrenal',
			(int) 15 => 'Bladder',
			(int) 16 => 'Brain',
			(int) 17 => 'Breast',
			(int) 18 => 'Colon',
			(int) 19 => 'Heart',
			(int) 20 => 'Kidney',
			(int) 21 => 'Liver',
			(int) 22 => 'Lung',
			(int) 23 => 'Ovary',
			(int) 24 => 'Placenta',
			(int) 25 => 'Testis',
			(int) 26 => 'Brain',
			(int) 27 => 'Adrenal',
			(int) 28 => 'Brain',
			(int) 29 => 'Colon',
			(int) 30 => 'Heart',
			(int) 31 => 'Liver',
			(int) 32 => 'Lung',
			(int) 33 => 'Ovary',
			(int) 34 => 'Placenta',
			(int) 35 => 'Testis'
		)
	),
	'CIL_0007MI_0003' => array(
		'genes_in_region' => array(
			'ENSDARG00000008131' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Heart',
			(int) 2 => 'Kidney',
			(int) 3 => 'Muscle'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0007MI_0004',
		'tax_id' => '7955',
		'chromosome' => '9',
		'seq_start' => '22760015',
		'seq_end' => '22760336',
		'region_length' => '321',
		'region_type' => 'UCNEbase',
		'el_id' => 'SOX1'
	)
)
$gene_el = array(
	'ENSDART00000010894' => array(
		'Brain' => array(
			'average_FPKM' => '2.782',
			'stddev_FPKM' => '0.94'
		),
		'Heart' => array(
			'average_FPKM' => '0.083',
			'stddev_FPKM' => '0.01'
		),
		'Kidney' => array(
			'average_FPKM' => '0.047',
			'stddev_FPKM' => '0.00'
		),
		'Muscle' => array(
			'average_FPKM' => '0.433',
			'stddev_FPKM' => '0.00'
		)
	)
)
$gene_key = 'ENSDARG00000008131'
$is_first = false
$tran_el = array(
	'Brain' => array(
		'average_FPKM' => '2.782',
		'stddev_FPKM' => '0.94'
	),
	'Heart' => array(
		'average_FPKM' => '0.083',
		'stddev_FPKM' => '0.01'
	),
	'Kidney' => array(
		'average_FPKM' => '0.047',
		'stddev_FPKM' => '0.00'
	),
	'Muscle' => array(
		'average_FPKM' => '0.433',
		'stddev_FPKM' => '0.00'
	)
)
$tran_key = 'ENSDART00000010894'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
SOX1		UCNEbase	7955	9:22760015-22760336
Gene		Transcript	Position	Biotype

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

Loading