Notice (8): Undefined index: CIL_0007MI_0004 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007MI_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MI_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MI_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000182968' => 'SRY (sex determining region Y)-box 1',
'ENSG00000200072' => 'Small nucleolar RNA SNORD44',
'ENSG00000224243' => 'long intergenic non-protein coding RNA 403',
'ENSG00000229520' => 'long intergenic non-protein coding RNA 404',
'ENSG00000260385' => null,
'ENSMUSG00000047935' => 'predicted gene 5607',
'ENSMUSG00000089234' => 'predicted gene, 22207',
'ENSMUSG00000092656' => 'predicted gene, 25239',
'ENSMUSG00000096014' => 'SRY (sex determining region Y)-box 1',
'ENSDARG00000008131' => 'SRY-box containing gene 1b'
),
'gene_name_arr' => array(
'ENSG00000182968' => 'SOX1',
'ENSG00000200072' => 'SNORD44',
'ENSG00000224243' => 'LINC00403',
'ENSG00000229520' => 'LINC00404',
'ENSG00000260385' => 'RP11-450H6.3',
'ENSMUSG00000047935' => 'Gm5607',
'ENSMUSG00000089234' => 'Gm22207',
'ENSMUSG00000092656' => 'Gm25239',
'ENSMUSG00000096014' => 'Sox1',
'ENSDARG00000008131' => 'sox1b'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 9 => 'Brain',
(int) 16 => 'Breast',
(int) 19 => 'Colon',
(int) 25 => 'Heart',
(int) 31 => 'Kidney',
(int) 34 => 'Liver',
(int) 37 => 'Lung',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 45 => 'Placenta',
(int) 48 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 11,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000330949' => array(
'start' => '112067647',
'end' => '112070488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX1-001'
),
'ENST00000363202' => array(
'start' => '112052078',
'end' => '112052138',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORD44.1-201'
),
'ENST00000421423' => array(
'start' => '112107119',
'end' => '112108015',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00403-001'
),
'ENST00000418660' => array(
'start' => '112106095',
'end' => '112106882',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00404-001'
),
'ENST00000567967' => array(
'start' => '112083549',
'end' => '112085471',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-450H6.3-001'
),
'ENSMUST00000080795' => array(
'start' => '12385771',
'end' => '12436729',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm5607-201'
),
'ENSMUST00000186174' => array(
'start' => '12385771',
'end' => '12436750',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm5607-001'
),
'ENSMUST00000158609' => array(
'start' => '12356153',
'end' => '12356469',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22207-201'
),
'ENSMUST00000174915' => array(
'start' => '12396403',
'end' => '12396488',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25239-201'
),
'ENSMUST00000180353' => array(
'start' => '12395295',
'end' => '12400126',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox1-001'
),
'ENSDART00000010894' => array(
'start' => '46691440',
'end' => '46693214',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox1b-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007MI_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MI_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MI_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007MI_0001' => array(
'genes_in_region' => array(
'ENSG00000182968' => array(
[maximum depth reached]
),
'ENSG00000224243' => array(
[maximum depth reached]
),
'ENSG00000229520' => array(
[maximum depth reached]
),
'ENSG00000260385' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Adrenal',
(int) 7 => 'Colon',
(int) 8 => 'Testis',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Testis'
)
),
'CIL_0007MI_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000047935' => array(
[maximum depth reached]
),
'ENSMUSG00000089234' => array(
[maximum depth reached]
),
'ENSMUSG00000096014' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Brain',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis'
)
),
'CIL_0007MI_0003' => array(
'genes_in_region' => array(
'ENSDARG00000008131' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000182968' => 'SRY (sex determining region Y)-box 1',
'ENSG00000200072' => 'Small nucleolar RNA SNORD44',
'ENSG00000224243' => 'long intergenic non-protein coding RNA 403',
'ENSG00000229520' => 'long intergenic non-protein coding RNA 404',
'ENSG00000260385' => null,
'ENSMUSG00000047935' => 'predicted gene 5607',
'ENSMUSG00000089234' => 'predicted gene, 22207',
'ENSMUSG00000092656' => 'predicted gene, 25239',
'ENSMUSG00000096014' => 'SRY (sex determining region Y)-box 1',
'ENSDARG00000008131' => 'SRY-box containing gene 1b'
)
$gene_name_arr = array(
'ENSG00000182968' => 'SOX1',
'ENSG00000200072' => 'SNORD44',
'ENSG00000224243' => 'LINC00403',
'ENSG00000229520' => 'LINC00404',
'ENSG00000260385' => 'RP11-450H6.3',
'ENSMUSG00000047935' => 'Gm5607',
'ENSMUSG00000089234' => 'Gm22207',
'ENSMUSG00000092656' => 'Gm25239',
'ENSMUSG00000096014' => 'Sox1',
'ENSDARG00000008131' => 'sox1b'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MI_0001',
'tax_id' => '9606',
'chromosome' => '13',
'seq_start' => '111976795',
'seq_end' => '112139574',
'region_length' => '162779',
'region_type' => 'UCNEbase',
'el_id' => 'SOX1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MI_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '12327809',
'seq_end' => '12463108',
'region_length' => '135299',
'region_type' => 'UCNEbase',
'el_id' => 'SOX1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MI_0003',
'tax_id' => '7955',
'chromosome' => '1',
'seq_start' => '46671857',
'seq_end' => '46695703',
'region_length' => '23846',
'region_type' => 'UCNEbase',
'el_id' => 'SOX1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MI_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '22760015',
'seq_end' => '22760336',
'region_length' => '321',
'region_type' => 'UCNEbase',
'el_id' => 'SOX1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 9 => 'Brain',
(int) 16 => 'Breast',
(int) 19 => 'Colon',
(int) 25 => 'Heart',
(int) 31 => 'Kidney',
(int) 34 => 'Liver',
(int) 37 => 'Lung',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 45 => 'Placenta',
(int) 48 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 11
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000330949' => array(
'start' => '112067647',
'end' => '112070488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX1-001'
),
'ENST00000363202' => array(
'start' => '112052078',
'end' => '112052138',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORD44.1-201'
),
'ENST00000421423' => array(
'start' => '112107119',
'end' => '112108015',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00403-001'
),
'ENST00000418660' => array(
'start' => '112106095',
'end' => '112106882',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00404-001'
),
'ENST00000567967' => array(
'start' => '112083549',
'end' => '112085471',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-450H6.3-001'
),
'ENSMUST00000080795' => array(
'start' => '12385771',
'end' => '12436729',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm5607-201'
),
'ENSMUST00000186174' => array(
'start' => '12385771',
'end' => '12436750',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm5607-001'
),
'ENSMUST00000158609' => array(
'start' => '12356153',
'end' => '12356469',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22207-201'
),
'ENSMUST00000174915' => array(
'start' => '12396403',
'end' => '12396488',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25239-201'
),
'ENSMUST00000180353' => array(
'start' => '12395295',
'end' => '12400126',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox1-001'
),
'ENSDART00000010894' => array(
'start' => '46691440',
'end' => '46693214',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox1b-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007MI_0001' => array(
'genes_in_region' => array(
'ENSG00000182968' => array(
[maximum depth reached]
),
'ENSG00000224243' => array(
[maximum depth reached]
),
'ENSG00000229520' => array(
[maximum depth reached]
),
'ENSG00000260385' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Adrenal',
(int) 7 => 'Colon',
(int) 8 => 'Testis',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Testis'
)
),
'CIL_0007MI_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000047935' => array(
[maximum depth reached]
),
'ENSMUSG00000089234' => array(
[maximum depth reached]
),
'ENSMUSG00000096014' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Brain',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis'
)
),
'CIL_0007MI_0003' => array(
'genes_in_region' => array(
'ENSDARG00000008131' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MI_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '22760015',
'seq_end' => '22760336',
'region_length' => '321',
'region_type' => 'UCNEbase',
'el_id' => 'SOX1'
)
)
$gene_el = array(
'ENSDART00000010894' => array(
'Brain' => array(
'average_FPKM' => '2.782',
'stddev_FPKM' => '0.94'
),
'Heart' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.01'
),
'Kidney' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000008131'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '2.782',
'stddev_FPKM' => '0.94'
),
'Heart' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.01'
),
'Kidney' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000010894'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007MI_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MI_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MI_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000182968' => 'SRY (sex determining region Y)-box 1',
'ENSG00000200072' => 'Small nucleolar RNA SNORD44',
'ENSG00000224243' => 'long intergenic non-protein coding RNA 403',
'ENSG00000229520' => 'long intergenic non-protein coding RNA 404',
'ENSG00000260385' => null,
'ENSMUSG00000047935' => 'predicted gene 5607',
'ENSMUSG00000089234' => 'predicted gene, 22207',
'ENSMUSG00000092656' => 'predicted gene, 25239',
'ENSMUSG00000096014' => 'SRY (sex determining region Y)-box 1',
'ENSDARG00000008131' => 'SRY-box containing gene 1b'
),
'gene_name_arr' => array(
'ENSG00000182968' => 'SOX1',
'ENSG00000200072' => 'SNORD44',
'ENSG00000224243' => 'LINC00403',
'ENSG00000229520' => 'LINC00404',
'ENSG00000260385' => 'RP11-450H6.3',
'ENSMUSG00000047935' => 'Gm5607',
'ENSMUSG00000089234' => 'Gm22207',
'ENSMUSG00000092656' => 'Gm25239',
'ENSMUSG00000096014' => 'Sox1',
'ENSDARG00000008131' => 'sox1b'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 9 => 'Brain',
(int) 16 => 'Breast',
(int) 19 => 'Colon',
(int) 25 => 'Heart',
(int) 31 => 'Kidney',
(int) 34 => 'Liver',
(int) 37 => 'Lung',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 45 => 'Placenta',
(int) 48 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 11,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000330949' => array(
'start' => '112067647',
'end' => '112070488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX1-001'
),
'ENST00000363202' => array(
'start' => '112052078',
'end' => '112052138',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORD44.1-201'
),
'ENST00000421423' => array(
'start' => '112107119',
'end' => '112108015',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00403-001'
),
'ENST00000418660' => array(
'start' => '112106095',
'end' => '112106882',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00404-001'
),
'ENST00000567967' => array(
'start' => '112083549',
'end' => '112085471',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-450H6.3-001'
),
'ENSMUST00000080795' => array(
'start' => '12385771',
'end' => '12436729',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm5607-201'
),
'ENSMUST00000186174' => array(
'start' => '12385771',
'end' => '12436750',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm5607-001'
),
'ENSMUST00000158609' => array(
'start' => '12356153',
'end' => '12356469',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22207-201'
),
'ENSMUST00000174915' => array(
'start' => '12396403',
'end' => '12396488',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25239-201'
),
'ENSMUST00000180353' => array(
'start' => '12395295',
'end' => '12400126',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox1-001'
),
'ENSDART00000010894' => array(
'start' => '46691440',
'end' => '46693214',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox1b-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007MI_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MI_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007MI_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007MI_0001' => array(
'genes_in_region' => array(
'ENSG00000182968' => array(
[maximum depth reached]
),
'ENSG00000224243' => array(
[maximum depth reached]
),
'ENSG00000229520' => array(
[maximum depth reached]
),
'ENSG00000260385' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Adrenal',
(int) 7 => 'Colon',
(int) 8 => 'Testis',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Testis'
)
),
'CIL_0007MI_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000047935' => array(
[maximum depth reached]
),
'ENSMUSG00000089234' => array(
[maximum depth reached]
),
'ENSMUSG00000096014' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Brain',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis'
)
),
'CIL_0007MI_0003' => array(
'genes_in_region' => array(
'ENSDARG00000008131' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSG00000182968' => 'SRY (sex determining region Y)-box 1',
'ENSG00000200072' => 'Small nucleolar RNA SNORD44',
'ENSG00000224243' => 'long intergenic non-protein coding RNA 403',
'ENSG00000229520' => 'long intergenic non-protein coding RNA 404',
'ENSG00000260385' => null,
'ENSMUSG00000047935' => 'predicted gene 5607',
'ENSMUSG00000089234' => 'predicted gene, 22207',
'ENSMUSG00000092656' => 'predicted gene, 25239',
'ENSMUSG00000096014' => 'SRY (sex determining region Y)-box 1',
'ENSDARG00000008131' => 'SRY-box containing gene 1b'
)
$gene_name_arr = array(
'ENSG00000182968' => 'SOX1',
'ENSG00000200072' => 'SNORD44',
'ENSG00000224243' => 'LINC00403',
'ENSG00000229520' => 'LINC00404',
'ENSG00000260385' => 'RP11-450H6.3',
'ENSMUSG00000047935' => 'Gm5607',
'ENSMUSG00000089234' => 'Gm22207',
'ENSMUSG00000092656' => 'Gm25239',
'ENSMUSG00000096014' => 'Sox1',
'ENSDARG00000008131' => 'sox1b'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MI_0001',
'tax_id' => '9606',
'chromosome' => '13',
'seq_start' => '111976795',
'seq_end' => '112139574',
'region_length' => '162779',
'region_type' => 'UCNEbase',
'el_id' => 'SOX1'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MI_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '12327809',
'seq_end' => '12463108',
'region_length' => '135299',
'region_type' => 'UCNEbase',
'el_id' => 'SOX1'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MI_0003',
'tax_id' => '7955',
'chromosome' => '1',
'seq_start' => '46671857',
'seq_end' => '46695703',
'region_length' => '23846',
'region_type' => 'UCNEbase',
'el_id' => 'SOX1'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MI_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '22760015',
'seq_end' => '22760336',
'region_length' => '321',
'region_type' => 'UCNEbase',
'el_id' => 'SOX1'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 7 => 'Bladder',
(int) 9 => 'Brain',
(int) 16 => 'Breast',
(int) 19 => 'Colon',
(int) 25 => 'Heart',
(int) 31 => 'Kidney',
(int) 34 => 'Liver',
(int) 37 => 'Lung',
(int) 40 => 'Muscle',
(int) 41 => 'Ovary',
(int) 45 => 'Placenta',
(int) 48 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 11
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000330949' => array(
'start' => '112067647',
'end' => '112070488',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX1-001'
),
'ENST00000363202' => array(
'start' => '112052078',
'end' => '112052138',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORD44.1-201'
),
'ENST00000421423' => array(
'start' => '112107119',
'end' => '112108015',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00403-001'
),
'ENST00000418660' => array(
'start' => '112106095',
'end' => '112106882',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00404-001'
),
'ENST00000567967' => array(
'start' => '112083549',
'end' => '112085471',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-450H6.3-001'
),
'ENSMUST00000080795' => array(
'start' => '12385771',
'end' => '12436729',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm5607-201'
),
'ENSMUST00000186174' => array(
'start' => '12385771',
'end' => '12436750',
'transcript_biotype' => 'sense_overlapping',
'transcript_name' => 'Gm5607-001'
),
'ENSMUST00000158609' => array(
'start' => '12356153',
'end' => '12356469',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Gm22207-201'
),
'ENSMUST00000174915' => array(
'start' => '12396403',
'end' => '12396488',
'transcript_biotype' => 'miRNA',
'transcript_name' => 'Gm25239-201'
),
'ENSMUST00000180353' => array(
'start' => '12395295',
'end' => '12400126',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox1-001'
),
'ENSDART00000010894' => array(
'start' => '46691440',
'end' => '46693214',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'sox1b-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007MI_0001' => array(
'genes_in_region' => array(
'ENSG00000182968' => array(
[maximum depth reached]
),
'ENSG00000224243' => array(
[maximum depth reached]
),
'ENSG00000229520' => array(
[maximum depth reached]
),
'ENSG00000260385' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Ovary',
(int) 5 => 'Testis',
(int) 6 => 'Adrenal',
(int) 7 => 'Colon',
(int) 8 => 'Testis',
(int) 9 => 'Colon',
(int) 10 => 'Heart',
(int) 11 => 'Testis',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Testis'
)
),
'CIL_0007MI_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000047935' => array(
[maximum depth reached]
),
'ENSMUSG00000089234' => array(
[maximum depth reached]
),
'ENSMUSG00000096014' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Adrenal',
(int) 15 => 'Bladder',
(int) 16 => 'Brain',
(int) 17 => 'Breast',
(int) 18 => 'Colon',
(int) 19 => 'Heart',
(int) 20 => 'Kidney',
(int) 21 => 'Liver',
(int) 22 => 'Lung',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Brain',
(int) 27 => 'Adrenal',
(int) 28 => 'Brain',
(int) 29 => 'Colon',
(int) 30 => 'Heart',
(int) 31 => 'Liver',
(int) 32 => 'Lung',
(int) 33 => 'Ovary',
(int) 34 => 'Placenta',
(int) 35 => 'Testis'
)
),
'CIL_0007MI_0003' => array(
'genes_in_region' => array(
'ENSDARG00000008131' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007MI_0004',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '22760015',
'seq_end' => '22760336',
'region_length' => '321',
'region_type' => 'UCNEbase',
'el_id' => 'SOX1'
)
)
$gene_el = array(
'ENSDART00000010894' => array(
'Brain' => array(
'average_FPKM' => '2.782',
'stddev_FPKM' => '0.94'
),
'Heart' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.01'
),
'Kidney' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000008131'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '2.782',
'stddev_FPKM' => '0.94'
),
'Heart' => array(
'average_FPKM' => '0.083',
'stddev_FPKM' => '0.01'
),
'Kidney' => array(
'average_FPKM' => '0.047',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.433',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000010894'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| SOX1 |
UCNEbase |
7955 |
9:22760015-22760336  |
| Gene | Transcript | Position | Biotype |
|---|
(SOX1)