C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008SC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs571 VISTA 9606 13:111838839-112439816
GeneTranscriptPositionBiotype
ENSG00000153498 (SPACA7)
sperm acrosome associated 7 		ENST00000283550 (SPACA7-001) 112376319-112434689 protein_coding
ENST00000375699 (SPACA7-004) 112382278-112434689 protein_coding
ENST00000414180 (SPACA7-002) 112376355-112399173 protein_coding
ENST00000443541 (SPACA7-003) 112376388-112401096 protein_coding
ENSG00000182968 (SOX1)
SRY (sex determining region Y)-box 1 		ENST00000330949 (SOX1-001) 112067647-112070488 protein_coding
ENSG00000223626 (LINC01044)
long intergenic non-protein coding RNA 1044 		ENST00000413637 (LINC01044-001) 112322567-112331225 lincRNA
ENSG00000224243 (LINC00403)
long intergenic non-protein coding RNA 403 		ENST00000421423 (LINC00403-001) 112107119-112108015 lincRNA
ENSG00000226903 (LINC00354)
long intergenic non-protein coding RNA 354 		ENST00000412119 (LINC00354-001) 111899988-111900936 lincRNA
ENST00000440860 (LINC00354-002) 111899985-111901176 lincRNA
ENSG00000229520 (LINC00404)
long intergenic non-protein coding RNA 404 		ENST00000418660 (LINC00404-001) 112106095-112106882 lincRNA
ENSG00000260102 (LINC01070)
long intergenic non-protein coding RNA 1070 		ENST00000561786 (LINC01070-001) 112197350-112201000 lincRNA
ENSG00000260343 (LINC01043)
long intergenic non-protein coding RNA 1043 		ENST00000565936 (LINC01043-001) 112313467-112321758 lincRNA
ENSG00000260385 (RP11-450H6.3)
 ENST00000567967 (RP11-450H6.3-001) 112083549-112085471 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0008SC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs571 VISTA 10090 8:12162372-12763356
GeneTranscriptPositionBiotype
ENSMUSG00000000759 (Tubgcp3)
tubulin, gamma complex associated protein 3 		ENSMUST00000000776 (Tubgcp3-001) 12614277-12672248 protein_coding
ENSMUST00000164611 (Tubgcp3-007) 12615167-12637955 retained_intron
ENSMUST00000164774 (Tubgcp3-003) 12614277-12672099 nonsense_mediated_decay
ENSMUST00000164861 (Tubgcp3-005) 12649911-12655902 retained_intron
ENSMUST00000164971 (Tubgcp3-004) 12621799-12657620 retained_intron
ENSMUST00000165321 (Tubgcp3-009) 12654253-12657634 nonsense_mediated_decay
ENSMUST00000167547 (Tubgcp3-002) 12630410-12672123 retained_intron
ENSMUST00000168657 (Tubgcp3-010) 12614279-12637982 retained_intron
ENSMUST00000172056 (Tubgcp3-008) 12654288-12671959 nonsense_mediated_decay
ENSMUSG00000010435 (Spaca7)
sperm acrosome associated 7 		ENSMUST00000010579 (Spaca7-201) 12573049-12600738 protein_coding
ENSMUSG00000031441 (Atp11a)
ATPase, class VI, type 11A 		ENSMUST00000033818 (Atp11a-001) 12757014-12868728 protein_coding
ENSMUST00000091237 (Atp11a-002) 12757016-12868728 protein_coding
ENSMUST00000125031 (Atp11a-005) 12811416-12814383 retained_intron
ENSMUST00000127197 (Atp11a-006) 12822400-12828537 retained_intron
ENSMUST00000131804 (Atp11a-009) 12857962-12862202 protein_coding
ENSMUST00000132974 (Atp11a-003) 12835165-12868667 protein_coding
ENSMUST00000133338 (Atp11a-004) 12757069-12859720 nonsense_mediated_decay
ENSMUST00000136918 (Atp11a-007) 12849841-12851724 processed_transcript
ENSMUST00000139545 (Atp11a-011) 12861565-12865570 retained_intron
ENSMUST00000143359 (Atp11a-010) 12856960-12862205 protein_coding
ENSMUST00000152273 (Atp11a-008) 12847855-12857270 protein_coding
ENSMUSG00000047935 (Gm5607)
predicted gene 5607 		ENSMUST00000080795 (Gm5607-201) 12385771-12436729 sense_overlapping
ENSMUST00000186174 (Gm5607-001) 12385771-12436750 sense_overlapping
ENSMUSG00000054910 (4931415C17Rik)
RIKEN cDNA 4931415C17 gene 		ENSMUST00000068194 (4931415C17Rik-201) 12672186-12673488 processed_transcript
ENSMUST00000131064 (4931415C17Rik-001) 12672427-12679229 processed_transcript
ENSMUSG00000074469 (Gm15348)
predicted gene 15348 		ENSMUST00000151188 (Gm15348-001) 12706944-12719127 lincRNA
ENSMUSG00000074473 (A230072I06Rik)
RIKEN cDNA A230072I06 gene 		ENSMUST00000098935 (A230072I06Rik-201) 12278819-12280657 protein_coding
ENSMUSG00000089234 (Gm22207)
predicted gene, 22207 		ENSMUST00000158609 (Gm22207-201) 12356153-12356469 misc_RNA
ENSMUSG00000096014 (Sox1)
SRY (sex determining region Y)-box 1 		ENSMUST00000180353 (Sox1-001) 12395295-12400126 protein_coding
ENSMUSG00000097421 (D630011A20Rik)
RIKEN cDNA D630011A20 gene 		ENSMUST00000180858 (D630011A20Rik-201) 12554270-12573320 protein_coding
ENSMUSG00000101899 (RP24-133K20.2)
predicted gene 29175 		ENSMUST00000189500 (RP24-133K20.2-001) 12282211-12282612 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SC_0001ENSG00000153498ENST00000283550ENST00000375699ENST00000414180ENST00000443541ENSG00000182968ENST00000330949ENSG00000223626ENST00000413637ENSG00000224243ENST00000421423ENSG00000226903ENST00000412119ENST00000440860ENSG00000229520ENST00000418660ENSG00000260102ENST00000561786ENSG00000260343ENST00000565936ENSG00000260385ENST00000567967CIL_0008SC_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SC_0001ENSG00000153498ENST00000283550ENST00000375699ENST00000414180ENSG00000182968ENST00000330949ENSG00000223626ENST00000413637ENSG00000224243ENST00000421423ENSG00000226903ENST00000412119ENST00000440860ENSG00000229520ENST00000418660ENSG00000260102ENST00000561786ENSG00000260343ENST00000565936ENSG00000260385ENST00000567967CIL_0008SC_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153498 ENST00000283550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.333±7.25
ENST00000375699 N/A 0.151±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414180 0.217±0.00 N/A N/A 0.166±0.00 0.342±0.00 0.232±0.00 0.083±0.00 N/A N/A 0.083±0.00 N/A 0.039±0.00 N/A N/A
ENST00000443541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182968 ENST00000330949 N/A 0.007±0.00 N/A 1.319±0.77 0.007±0.00 0.061±0.00 N/A N/A N/A N/A N/A 0.007±0.00 N/A 2.227±0.28
ENSG00000223626 ENST00000413637 0.064±0.00 0.268±0.00 N/A 0.236±0.00 0.538±0.00 N/A 0.091±0.00 0.035±0.00 N/A 0.307±0.00 0.140±0.00 0.125±0.00 N/A 0.727±0.41
ENSG00000224243 ENST00000421423 N/A 0.036±0.00 N/A N/A N/A 0.763±0.00 N/A N/A N/A N/A N/A N/A N/A 0.463±0.10
ENSG00000226903 ENST00000412119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.585±0.80
ENST00000440860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.870±0.32
ENSG00000229520 ENST00000418660 N/A N/A N/A N/A N/A 0.293±0.00 0.114±0.00 N/A N/A N/A N/A N/A N/A 0.113±0.00
ENSG00000260102 ENST00000561786 0.016±0.00 N/A N/A N/A 0.281±0.00 N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A 0.161±0.01
ENSG00000260343 ENST00000565936 N/A N/A N/A N/A 0.049±0.00 N/A 0.008±0.00 0.095±0.00 0.024±0.00 N/A N/A N/A N/A 0.345±0.28
ENSG00000260385 ENST00000567967 N/A N/A N/A 0.027±0.00 N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A 0.018±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000759 ENSMUST00000000776 3.611±0.87 N/A 4.494±1.25 5.635±2.03 3.335±1.27 3.592±0.00 2.649±0.45 2.417±0.88 8.729±4.61 3.953±1.26 2.149±0.29 8.859±2.07 5.921±2.63 2.011±0.23
ENSMUST00000164611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.364±0.00
ENSMUST00000164774 6.298±2.48 13.514±1.40 3.442±0.67 3.270±0.38 10.255±4.39 9.668±2.01 2.404±0.65 3.196±0.97 2.388±0.87 11.643±1.93 N/A 15.580±2.89 2.735±0.22 2.948±0.07
ENSMUST00000164861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164971 N/A N/A N/A N/A N/A N/A N/A 1.838±0.07 N/A N/A N/A N/A N/A N/A
ENSMUST00000165321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167547 N/A 4.412±0.08 N/A N/A N/A N/A N/A N/A 3.379±0.05 N/A 0.394±0.00 3.628±0.00 N/A N/A
ENSMUST00000168657 6.243±1.22 8.718±0.49 7.307±1.05 7.474±1.35 5.089±1.39 6.295±0.14 2.259±0.53 4.467±0.89 7.789±5.81 6.220±0.74 1.140±0.15 9.824±2.65 6.197±3.50 2.150±0.00
ENSMUST00000172056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000010435 ENSMUST00000010579 N/A N/A N/A 0.024±0.00 N/A N/A 0.052±0.00 0.088±0.03 N/A N/A N/A 0.056±0.00 0.083±0.00 94.661±40.87
ENSMUSG00000031441 ENSMUST00000033818 12.506±6.01 8.956±1.36 9.088±1.58 2.724±0.00 5.964±0.55 4.069±1.37 8.052±1.92 17.130±7.50 0.531±0.17 39.774±2.94 5.973±1.02 9.744±2.76 20.519±19.14 N/A
ENSMUST00000091237 N/A N/A N/A 3.987±0.30 N/A N/A 2.170±0.00 5.760±0.55 0.389±0.10 N/A N/A 4.783±0.50 14.457±7.43 4.328±0.95
ENSMUST00000125031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132974 17.325±10.53 28.626±15.93 9.390±1.28 6.427±0.06 6.351±0.84 11.209±8.61 8.422±2.30 56.651±23.01 0.735±0.24 76.343±17.38 N/A 19.964±10.67 13.264±0.95 4.673±1.36
ENSMUST00000133338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.127±0.27
ENSMUST00000136918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.331±5.54
ENSMUST00000152273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047935 ENSMUST00000080795 0.012±0.01 0.009±0.00 0.004±0.00 4.874±3.52 0.049±0.04 0.053±0.03 0.006±0.00 0.005±0.00 0.006±0.01 0.008±0.00 N/A 0.049±0.03 0.009±0.00 0.044±0.02
ENSMUST00000186174 0.012±0.01 0.009±0.00 0.001±0.00 1.798±0.69 0.025±0.02 0.053±0.03 0.004±0.00 0.005±0.00 0.004±0.00 0.008±0.00 N/A 0.041±0.02 0.002±0.00 0.006±0.00
ENSMUSG00000054910 ENSMUST00000068194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.598±0.29
ENSMUST00000131064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.499±0.45
ENSMUSG00000074469 ENSMUST00000151188 0.011±0.00 N/A N/A 0.009±0.01 N/A N/A N/A 0.093±0.03 0.025±0.02 0.014±0.00 N/A 0.005±0.00 0.020±0.01 0.023±0.00
ENSMUSG00000074473 ENSMUST00000098935 N/A N/A N/A 0.071±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000089234 ENSMUST00000158609 N/A N/A N/A 0.500±0.29 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000096014 ENSMUST00000180353 N/A 0.012±0.01 N/A 8.552±5.00 N/A 0.055±0.01 0.006±0.00 N/A 0.029±0.04 0.005±0.00 N/A 0.013±0.00 0.004±0.00 0.717±0.41
ENSMUSG00000097421 ENSMUST00000180858 N/A N/A N/A N/A N/A 0.428±0.29 N/A 0.146±0.04 0.060±0.04 N/A N/A 0.312±0.00 0.015±0.00 N/A
ENSMUSG00000101899 ENSMUST00000189500 N/A N/A N/A 0.093±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading