C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008SC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs571 VISTA 9606 13:111838839-112439816
GeneTranscriptPositionBiotype
ENSG00000153498 (SPACA7)
sperm acrosome associated 7 		ENST00000283550 (SPACA7-001) 112376319-112434689 protein_coding
ENST00000375699 (SPACA7-004) 112382278-112434689 protein_coding
ENST00000414180 (SPACA7-002) 112376355-112399173 protein_coding
ENST00000443541 (SPACA7-003) 112376388-112401096 protein_coding
ENSG00000182968 (SOX1)
SRY (sex determining region Y)-box 1 		ENST00000330949 (SOX1-001) 112067647-112070488 protein_coding
ENSG00000223626 (LINC01044)
long intergenic non-protein coding RNA 1044 		ENST00000413637 (LINC01044-001) 112322567-112331225 lincRNA
ENSG00000224243 (LINC00403)
long intergenic non-protein coding RNA 403 		ENST00000421423 (LINC00403-001) 112107119-112108015 lincRNA
ENSG00000226903 (LINC00354)
long intergenic non-protein coding RNA 354 		ENST00000412119 (LINC00354-001) 111899988-111900936 lincRNA
ENST00000440860 (LINC00354-002) 111899985-111901176 lincRNA
ENSG00000229520 (LINC00404)
long intergenic non-protein coding RNA 404 		ENST00000418660 (LINC00404-001) 112106095-112106882 lincRNA
ENSG00000260102 (LINC01070)
long intergenic non-protein coding RNA 1070 		ENST00000561786 (LINC01070-001) 112197350-112201000 lincRNA
ENSG00000260343 (LINC01043)
long intergenic non-protein coding RNA 1043 		ENST00000565936 (LINC01043-001) 112313467-112321758 lincRNA
ENSG00000260385 (RP11-450H6.3)
 ENST00000567967 (RP11-450H6.3-001) 112083549-112085471 lincRNA
CIL_0008SC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs571 VISTA 10090 8:12162372-12763356
GeneTranscriptPositionBiotype
ENSMUSG00000000759 (Tubgcp3)
tubulin, gamma complex associated protein 3 		ENSMUST00000000776 (Tubgcp3-001) 12614277-12672248 protein_coding
ENSMUST00000164611 (Tubgcp3-007) 12615167-12637955 retained_intron
ENSMUST00000164774 (Tubgcp3-003) 12614277-12672099 nonsense_mediated_decay
ENSMUST00000164861 (Tubgcp3-005) 12649911-12655902 retained_intron
ENSMUST00000164971 (Tubgcp3-004) 12621799-12657620 retained_intron
ENSMUST00000165321 (Tubgcp3-009) 12654253-12657634 nonsense_mediated_decay
ENSMUST00000167547 (Tubgcp3-002) 12630410-12672123 retained_intron
ENSMUST00000168657 (Tubgcp3-010) 12614279-12637982 retained_intron
ENSMUST00000172056 (Tubgcp3-008) 12654288-12671959 nonsense_mediated_decay
ENSMUSG00000010435 (Spaca7)
sperm acrosome associated 7 		ENSMUST00000010579 (Spaca7-201) 12573049-12600738 protein_coding
ENSMUSG00000031441 (Atp11a)
ATPase, class VI, type 11A 		ENSMUST00000033818 (Atp11a-001) 12757014-12868728 protein_coding
ENSMUST00000091237 (Atp11a-002) 12757016-12868728 protein_coding
ENSMUST00000125031 (Atp11a-005) 12811416-12814383 retained_intron
ENSMUST00000127197 (Atp11a-006) 12822400-12828537 retained_intron
ENSMUST00000131804 (Atp11a-009) 12857962-12862202 protein_coding
ENSMUST00000132974 (Atp11a-003) 12835165-12868667 protein_coding
ENSMUST00000133338 (Atp11a-004) 12757069-12859720 nonsense_mediated_decay
ENSMUST00000136918 (Atp11a-007) 12849841-12851724 processed_transcript
ENSMUST00000139545 (Atp11a-011) 12861565-12865570 retained_intron
ENSMUST00000143359 (Atp11a-010) 12856960-12862205 protein_coding
ENSMUST00000152273 (Atp11a-008) 12847855-12857270 protein_coding
ENSMUSG00000047935 (Gm5607)
predicted gene 5607 		ENSMUST00000080795 (Gm5607-201) 12385771-12436729 sense_overlapping
ENSMUST00000186174 (Gm5607-001) 12385771-12436750 sense_overlapping
ENSMUSG00000054910 (4931415C17Rik)
RIKEN cDNA 4931415C17 gene 		ENSMUST00000068194 (4931415C17Rik-201) 12672186-12673488 processed_transcript
ENSMUST00000131064 (4931415C17Rik-001) 12672427-12679229 processed_transcript
ENSMUSG00000074469 (Gm15348)
predicted gene 15348 		ENSMUST00000151188 (Gm15348-001) 12706944-12719127 lincRNA
ENSMUSG00000074473 (A230072I06Rik)
RIKEN cDNA A230072I06 gene 		ENSMUST00000098935 (A230072I06Rik-201) 12278819-12280657 protein_coding
ENSMUSG00000089234 (Gm22207)
predicted gene, 22207 		ENSMUST00000158609 (Gm22207-201) 12356153-12356469 misc_RNA
ENSMUSG00000096014 (Sox1)
SRY (sex determining region Y)-box 1 		ENSMUST00000180353 (Sox1-001) 12395295-12400126 protein_coding
ENSMUSG00000097421 (D630011A20Rik)
RIKEN cDNA D630011A20 gene 		ENSMUST00000180858 (D630011A20Rik-201) 12554270-12573320 protein_coding
ENSMUSG00000101899 (RP24-133K20.2)
predicted gene 29175 		ENSMUST00000189500 (RP24-133K20.2-001) 12282211-12282612 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SC_0001ENSG00000153498ENST00000283550ENST00000375699ENST00000414180ENST00000443541ENSG00000182968ENST00000330949ENSG00000223626ENST00000413637ENSG00000224243ENST00000421423ENSG00000226903ENST00000412119ENST00000440860ENSG00000229520ENST00000418660ENSG00000260102ENST00000561786ENSG00000260343ENST00000565936ENSG00000260385ENST00000567967CIL_0008SC_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SC_0001ENSG00000153498ENST00000283550ENST00000375699ENST00000414180ENSG00000182968ENST00000330949ENSG00000223626ENST00000413637ENSG00000224243ENST00000421423ENSG00000226903ENST00000412119ENST00000440860ENSG00000229520ENST00000418660ENSG00000260102ENST00000561786ENSG00000260343ENST00000565936ENSG00000260385ENST00000567967CIL_0008SC_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000153498 ENST00000283550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.333±7.25
ENST00000375699 N/A 0.151±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414180 0.217±0.00 N/A N/A 0.166±0.00 0.342±0.00 0.232±0.00 0.083±0.00 N/A N/A 0.083±0.00 N/A 0.039±0.00 N/A N/A
ENST00000443541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182968 ENST00000330949 N/A 0.007±0.00 N/A 1.319±0.77 0.007±0.00 0.061±0.00 N/A N/A N/A N/A N/A 0.007±0.00 N/A 2.227±0.28
ENSG00000223626 ENST00000413637 0.064±0.00 0.268±0.00 N/A 0.236±0.00 0.538±0.00 N/A 0.091±0.00 0.035±0.00 N/A 0.307±0.00 0.140±0.00 0.125±0.00 N/A 0.727±0.41
ENSG00000224243 ENST00000421423 N/A 0.036±0.00 N/A N/A N/A 0.763±0.00 N/A N/A N/A N/A N/A N/A N/A 0.463±0.10
ENSG00000226903 ENST00000412119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.585±0.80
ENST00000440860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.870±0.32
ENSG00000229520 ENST00000418660 N/A N/A N/A N/A N/A 0.293±0.00 0.114±0.00 N/A N/A N/A N/A N/A N/A 0.113±0.00
ENSG00000260102 ENST00000561786 0.016±0.00 N/A N/A N/A 0.281±0.00 N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A 0.161±0.01
ENSG00000260343 ENST00000565936 N/A N/A N/A N/A 0.049±0.00 N/A 0.008±0.00 0.095±0.00 0.024±0.00 N/A N/A N/A N/A 0.345±0.28
ENSG00000260385 ENST00000567967 N/A N/A N/A 0.027±0.00 N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A 0.018±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000759 ENSMUST00000000776 3.611±0.87 N/A 4.494±1.25 5.635±2.03 3.335±1.27 3.592±0.00 2.649±0.45 2.417±0.88 8.729±4.61 3.953±1.26 2.149±0.29 8.859±2.07 5.921±2.63 2.011±0.23
ENSMUST00000164611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.364±0.00
ENSMUST00000164774 6.298±2.48 13.514±1.40 3.442±0.67 3.270±0.38 10.255±4.39 9.668±2.01 2.404±0.65 3.196±0.97 2.388±0.87 11.643±1.93 N/A 15.580±2.89 2.735±0.22 2.948±0.07
ENSMUST00000164861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164971 N/A N/A N/A N/A N/A N/A N/A 1.838±0.07 N/A N/A N/A N/A N/A N/A
ENSMUST00000165321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167547 N/A 4.412±0.08 N/A N/A N/A N/A N/A N/A 3.379±0.05 N/A 0.394±0.00 3.628±0.00 N/A N/A
ENSMUST00000168657 6.243±1.22 8.718±0.49 7.307±1.05 7.474±1.35 5.089±1.39 6.295±0.14 2.259±0.53 4.467±0.89 7.789±5.81 6.220±0.74 1.140±0.15 9.824±2.65 6.197±3.50 2.150±0.00
ENSMUST00000172056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000010435 ENSMUST00000010579 N/A N/A N/A 0.024±0.00 N/A N/A 0.052±0.00 0.088±0.03 N/A N/A N/A 0.056±0.00 0.083±0.00 94.661±40.87
ENSMUSG00000031441 ENSMUST00000033818 12.506±6.01 8.956±1.36 9.088±1.58 2.724±0.00 5.964±0.55 4.069±1.37 8.052±1.92 17.130±7.50 0.531±0.17 39.774±2.94 5.973±1.02 9.744±2.76 20.519±19.14 N/A
ENSMUST00000091237 N/A N/A N/A 3.987±0.30 N/A N/A 2.170±0.00 5.760±0.55 0.389±0.10 N/A N/A 4.783±0.50 14.457±7.43 4.328±0.95
ENSMUST00000125031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132974 17.325±10.53 28.626±15.93 9.390±1.28 6.427±0.06 6.351±0.84 11.209±8.61 8.422±2.30 56.651±23.01 0.735±0.24 76.343±17.38 N/A 19.964±10.67 13.264±0.95 4.673±1.36
ENSMUST00000133338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.127±0.27
ENSMUST00000136918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.331±5.54
ENSMUST00000152273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047935 ENSMUST00000080795 0.012±0.01 0.009±0.00 0.004±0.00 4.874±3.52 0.049±0.04 0.053±0.03 0.006±0.00 0.005±0.00 0.006±0.01 0.008±0.00 N/A 0.049±0.03 0.009±0.00 0.044±0.02
ENSMUST00000186174 0.012±0.01 0.009±0.00 0.001±0.00 1.798±0.69 0.025±0.02 0.053±0.03 0.004±0.00 0.005±0.00 0.004±0.00 0.008±0.00 N/A 0.041±0.02 0.002±0.00 0.006±0.00
ENSMUSG00000054910 ENSMUST00000068194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.598±0.29
ENSMUST00000131064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.499±0.45
ENSMUSG00000074469 ENSMUST00000151188 0.011±0.00 N/A N/A 0.009±0.01 N/A N/A N/A 0.093±0.03 0.025±0.02 0.014±0.00 N/A 0.005±0.00 0.020±0.01 0.023±0.00
ENSMUSG00000074473 ENSMUST00000098935 N/A N/A N/A 0.071±0.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000089234 ENSMUST00000158609 N/A N/A N/A 0.500±0.29 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000096014 ENSMUST00000180353 N/A 0.012±0.01 N/A 8.552±5.00 N/A 0.055±0.01 0.006±0.00 N/A 0.029±0.04 0.005±0.00 N/A 0.013±0.00 0.004±0.00 0.717±0.41
ENSMUSG00000097421 ENSMUST00000180858 N/A N/A N/A N/A N/A 0.428±0.29 N/A 0.146±0.04 0.060±0.04 N/A N/A 0.312±0.00 0.015±0.00 N/A
ENSMUSG00000101899 ENSMUST00000189500 N/A N/A N/A 0.093±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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