C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Xrcc1 N-terminal domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106950 Xndc1-001 ENSMUSG00000099481 10090 + 7:102065511-102083762 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000106950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000106950 3.147±0.81 1.796±0.47 1.696±0.00 3.629±0.92 2.430±0.84 1.947±0.45 1.273±0.10 2.593±0.76 1.287±0.81 2.311±0.30 2.198±0.50 1.063±0.07 3.099±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZS CIL_0002ZS_0002 CGP 7:102065511-102096864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000012 IEA single strand break repair
GO:0000139 IDA Golgi membrane
GO:0002121 IMP inter-male aggressive behavior
GO:0002124 IMP territorial aggressive behavior
GO:0003684 IEA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005516 IDA calmodulin binding
GO:0005635 IDA nuclear envelope
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005886 IDA plasma membrane
GO:0006816 IMP calcium ion transport
GO:0007204 IPI positive regulation of cytosolic calcium ion concentration
GO:0007340 IMP acrosome reaction
GO:0008050 IMP female courtship behavior
GO:0010468 IMP regulation of gene expression
GO:0012505 IDA endomembrane system
GO:0015279 IDA store-operated calcium channel activity
GO:0019236 IMP response to pheromone
GO:0019992 IMP diacylglycerol binding
GO:0032590 IMP dendrite membrane
GO:0048047 IMP mating behavior, sex discrimination
GO:0070588 IDA calcium ion transmembrane transport
GO:1902436 IGI negative regulation of male mating behavior

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000528184 RP11-849H4.2-004 protein_coding Homo_sapiens 5.04467e-44 182
ENST00000528511 RP11-849H4.2-003 protein_coding Homo_sapiens 0 510
ENST00000529513 RP11-849H4.2-006 protein_coding Homo_sapiens 0 403
ENST00000529844 RP11-849H4.2-001 protein_coding Homo_sapiens 0 405
ENST00000532852 RP11-849H4.2-009 protein_coding Homo_sapiens 0 427
ENST00000533047 RP11-849H4.2-002 protein_coding Homo_sapiens 0 320
ENST00000534704 RP11-849H4.2-008 protein_coding Homo_sapiens 0 296

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