C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00001C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111704-ENSG00000173262 CGP 9606 12:7787794-7891148
GeneTranscriptPositionBiotype
ENSG00000111704 (NANOG)
Nanog homeobox 		ENST00000229307 (NANOG-001) 7789396-7799141 protein_coding
ENST00000526286 (NANOG-002) 7789615-7795095 protein_coding
ENST00000526434 (NANOG-003) 7789433-7793212 processed_transcript
ENST00000541267 (NANOG-004) 7787794-7794808 protein_coding
ENSG00000278459 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000614219 (Metazoa_SRP.1-473) 7856169-7856471 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_00001C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000012396-ENSMUSG00000003153 CGP 10090 6:122707489-122801640
GeneTranscriptPositionBiotype
ENSMUSG00000003153 (Slc2a3)
solute carrier family 2 (facilitated glucose transporter), member 3 		ENSMUST00000032476 (Slc2a3-001) 122727809-122742745 protein_coding
ENSMUST00000165884 (Slc2a3-008) 122737085-122801640 protein_coding
ENSMUST00000166135 (Slc2a3-003) 122729931-122742390 nonsense_mediated_decay
ENSMUST00000168704 (Slc2a3-002) 122727826-122742522 retained_intron
ENSMUST00000168801 (Slc2a3-004) 122739892-122742920 protein_coding
ENSMUST00000169979 (Slc2a3-006) 122731559-122733176 retained_intron
ENSMUST00000170724 (Slc2a3-005) 122739833-122742262 protein_coding
ENSMUST00000171541 (Slc2a3-007) 122737278-122779957 nonsense_mediated_decay
ENSMUSG00000012396 (Nanog)
Nanog homeobox 		ENSMUST00000012540 (Nanog-001) 122707568-122714633 protein_coding
ENSMUST00000112580 (Nanog-002) 122707565-122714633 protein_coding
ENSMUST00000112581 (Nanog-003) 122707489-122714633 protein_coding
ENSMUSG00000092076 (Gm4482)
predicted gene 4482 		ENSMUST00000167127 (Gm4482-201) 122792581-122792775 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00001C_0001ENSG00000111704ENST00000229307ENST00000526286ENST00000526434ENST00000541267ENSG00000278459ENST00000614219CIL_00001C_0002ENSMUSG00000003153ENSMUST00000032476ENSMUST00000165884ENSMUST00000166135ENSMUST00000168704ENSMUST00000168801ENSMUST00000169979ENSMUST00000170724ENSMUST00000171541ENSMUSG00000012396ENSMUST00000012540ENSMUST00000112580ENSMUST00000112581ENSMUSG00000092076ENSMUST00000167127
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00001C_0001ENSG00000111704ENST00000229307ENST00000526286ENST00000526434ENSG00000278459ENST00000614219CIL_00001C_0002ENSMUSG00000003153ENSMUST00000032476ENSMUST00000166135ENSMUST00000168704ENSMUST00000168801ENSMUSG00000012396ENSMUST00000012540ENSMUST00000112580ENSMUST00000112581ENSMUSG00000092076ENSMUST00000167127
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111704 ENST00000229307 0.048±0.00 0.201±0.00 0.012±0.00 0.135±0.00 0.113±0.00 0.107±0.00 0.034±0.03 0.085±0.00 0.038±0.02 0.075±0.00 0.088±0.00 0.042±0.03 0.017±0.00 0.266±0.13
ENST00000526286 N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526434 N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.07 N/A N/A N/A N/A N/A
ENST00000541267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000278459 ENST00000614219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.532±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003153 ENSMUST00000032476 0.825±0.58 1.119±0.18 0.873±0.03 9.833±9.15 0.995±0.43 1.016±0.31 0.542±0.00 0.376±0.25 1.255±1.09 1.135±0.36 N/A 10.223±4.06 19.923±0.32 153.893±100.28
ENSMUST00000165884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166135 0.332±0.00 N/A N/A N/A N/A 0.475±0.06 0.572±0.00 0.577±0.00 0.114±0.00 1.302±0.41 N/A 7.397±0.69 N/A N/A
ENSMUST00000168704 0.451±0.27 0.196±0.00 0.202±0.01 N/A 0.409±0.11 0.128±0.00 0.099±0.00 0.072±0.00 N/A 0.240±0.00 N/A 1.267±0.62 0.724±0.21 N/A
ENSMUST00000168801 N/A N/A N/A N/A N/A N/A N/A N/A 0.534±0.00 N/A N/A N/A N/A N/A
ENSMUST00000169979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000012396 ENSMUST00000012540 0.134±0.00 N/A 0.034±0.00 0.038±0.00 N/A N/A N/A N/A N/A 0.136±0.01 N/A 0.166±0.05 0.025±0.00 0.050±0.00
ENSMUST00000112580 0.115±0.13 N/A N/A 0.047±0.00 N/A N/A 0.002±0.00 N/A 0.008±0.01 N/A N/A 0.008±0.00 N/A 0.075±0.00
ENSMUST00000112581 0.019±0.00 N/A 0.038±0.03 0.037±0.00 0.121±0.03 0.056±0.02 0.014±0.00 0.031±0.01 0.021±0.01 0.086±0.05 N/A 0.145±0.08 0.070±0.02 0.072±0.02
ENSMUSG00000092076 ENSMUST00000167127 N/A 2.705±0.00 0.561±0.00 2.439±1.14 N/A N/A N/A 1.293±0.00 1.619±0.98 N/A N/A N/A 1.751±0.00 2.284±0.36

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