C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Nanog homeobox
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000526286 NANOG-002 ENSG00000111704 9606 + 12:7789615-7795095 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000526286
Transcript ID Brain
ENST00000526286 0.083±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001C CIL_00001C_0001 CGP 12:7787794-7891148

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001714 IDA endodermal cell fate specification
GO:0003677 IDA:IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003714 ISS transcription corepressor activity
GO:0005634 IC nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0008283 IMP cell proliferation
GO:0010468 IMP regulation of gene expression
GO:0019827 IEP stem cell maintenance
GO:0030154 IEP cell differentiation
GO:0035019 IMP somatic stem cell maintenance
GO:0045595 IMP regulation of cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000012540 Nanog-001 protein_coding Mus_musculus 0 226
ENSMUST00000112580 Nanog-002 protein_coding Mus_musculus 0 226
ENSMUST00000112581 Nanog-003 protein_coding Mus_musculus 0 226

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