C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00003K_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000111481-ENSG00000139572 CGP 9606 12:54301202-54364487
GeneTranscriptPositionBiotype
ENSG00000111481 (COPZ1)
coatomer protein complex, subunit zeta 1 		ENST00000262061 (COPZ1-001) 54325127-54351849 protein_coding
ENST00000455864 (COPZ1-004) 54325139-54350913 protein_coding
ENST00000548076 (COPZ1-007) 54301220-54343279 processed_transcript
ENST00000548281 (COPZ1-013) 54325202-54350578 processed_transcript
ENST00000548753 (COPZ1-014) 54325584-54350686 protein_coding
ENST00000549043 (COPZ1-002) 54325129-54351102 protein_coding
ENST00000549116 (COPZ1-012) 54325144-54350879 protein_coding
ENST00000550027 (COPZ1-016) 54325139-54348132 retained_intron
ENST00000550171 (COPZ1-003) 54325139-54351082 nonsense_mediated_decay
ENST00000550713 (COPZ1-015) 54340372-54347840 protein_coding
ENST00000551412 (COPZ1-011) 54325139-54347972 retained_intron
ENST00000551779 (COPZ1-005) 54325151-54350621 protein_coding
ENST00000551962 (COPZ1-009) 54325131-54350590 nonsense_mediated_decay
ENST00000552218 (COPZ1-010) 54325131-54350690 protein_coding
ENST00000552362 (COPZ1-017) 54325139-54350590 protein_coding
ENST00000552848 (COPZ1-006) 54301202-54345475 protein_coding
ENST00000553009 (COPZ1-008) 54325109-54342630 retained_intron
ENST00000553231 (COPZ1-018) 54325139-54350354 protein_coding
ENSG00000139572 (GPR84)
G protein-coupled receptor 84 		ENST00000267015 (GPR84-001) 54362445-54364474 protein_coding
ENST00000551809 (GPR84-002) 54362447-54364487 protein_coding
ENSG00000199122 (MIR148B)
microRNA 148b 		ENST00000362252 (MIR148B-201) 54337208-54337316 miRNA
ENSG00000258137 (RP11-753H16.3)
 ENST00000550474 (RP11-753H16.3-001) 54353661-54497688 antisense
ENST00000552053 (RP11-753H16.3-002) 54419785-54437104 antisense
ENSG00000258344 (RP11-968A15.8)
 ENST00000553061 (RP11-968A15.8-001) 54276631-54345083 sense_overlapping
ENSG00000264028 (RN7SL744P)
RNA, 7SL, cytoplasmic 744, pseudogene 		ENST00000577604 (RN7SL744P-201) 54344610-54344876 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_00003K_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060992-ENSMUSG00000063234 CGP 10090 15:103272911-103310438
GeneTranscriptPositionBiotype
ENSMUSG00000060992 (Copz1)
coatomer protein complex, subunit zeta 1 		ENSMUST00000100162 (Copz1-201) 103272911-103299862 protein_coding
ENSMUSG00000063234 (Gpr84)
G protein-coupled receptor 84 		ENSMUST00000079824 (Gpr84-201) 103308236-103310438 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003K_0001ENSG00000111481ENST00000262061ENST00000455864ENST00000548076ENST00000548281ENST00000548753ENST00000549043ENST00000549116ENST00000550027ENST00000550171ENST00000550713ENST00000551412ENST00000551779ENST00000551962ENST00000552218ENST00000552362ENST00000552848ENST00000553009ENST00000553231ENSG00000139572ENST00000267015ENST00000551809ENSG00000199122ENST00000362252ENSG00000258137ENST00000550474ENST00000552053ENSG00000258344ENST00000553061ENSG00000264028ENST00000577604CIL_00003K_0002ENSMUSG00000060992ENSMUST00000100162ENSMUSG00000063234ENSMUST00000079824
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00003K_0001ENSG00000111481ENST00000262061ENST00000455864ENST00000548753ENST00000549043ENST00000549116ENST00000550027ENST00000550171ENST00000550713ENST00000552362ENSG00000139572ENST00000267015ENST00000551809ENSG00000199122ENST00000362252ENSG00000258137ENST00000550474ENST00000552053ENSG00000258344ENST00000553061ENSG00000264028ENST00000577604CIL_00003K_0002ENSMUSG00000060992ENSMUST00000100162ENSMUSG00000063234ENSMUST00000079824
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111481 ENST00000262061 24.350±0.00 39.988±0.00 3.299±0.00 17.147±12.32 18.590±16.26 18.257±11.30 10.919±8.81 22.921±18.02 17.406±15.25 23.377±20.48 15.338±9.16 37.722±23.55 57.473±19.17 24.683±14.14
ENST00000455864 N/A N/A 6.142±0.00 11.266±0.00 8.344±0.00 10.218±0.00 5.632±0.00 4.215±0.00 14.008±0.00 3.112±0.00 10.035±0.00 14.702±9.07 21.895±4.75 13.160±0.00
ENST00000548076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.894±0.00
ENST00000549043 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.730±0.00 N/A N/A N/A N/A
ENST00000549116 N/A N/A N/A N/A N/A N/A 15.582±0.00 25.441±0.00 32.886±0.00 N/A 11.855±0.00 N/A N/A N/A
ENST00000550027 N/A N/A N/A N/A N/A N/A N/A 10.413±0.00 N/A 9.002±0.00 3.834±0.00 18.485±12.53 39.569±0.00 14.528±0.00
ENST00000550171 8.533±0.00 N/A N/A N/A N/A 10.528±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550713 N/A N/A N/A N/A 6.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552362 N/A N/A N/A N/A N/A N/A 2.441±0.00 N/A N/A N/A N/A 38.106±0.00 47.606±0.00 9.867±0.00
ENST00000552848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000139572 ENST00000267015 0.442±0.00 0.205±0.00 N/A 0.404±0.00 0.061±0.02 N/A 0.016±0.00 0.434±0.00 0.033±0.00 0.530±0.27 N/A 0.394±0.42 1.498±0.51 0.189±0.05
ENST00000551809 0.083±0.00 N/A N/A 0.138±0.00 0.047±0.00 N/A 0.042±0.00 N/A N/A N/A N/A 0.064±0.00 N/A 0.109±0.03
ENSG00000199122 ENST00000362252 N/A N/A N/A N/A 0.580±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258137 ENST00000550474 N/A 0.159±0.00 N/A 0.359±0.00 0.034±0.00 0.092±0.00 N/A 0.033±0.00 0.058±0.00 0.127±0.00 N/A N/A N/A 0.059±0.00
ENST00000552053 0.092±0.00 0.527±0.00 N/A N/A 0.103±0.00 N/A N/A 0.235±0.00 N/A N/A N/A 0.093±0.02 0.335±0.14 0.561±0.00
ENSG00000258344 ENST00000553061 0.040±0.00 0.519±0.00 N/A 0.020±0.00 0.057±0.00 0.018±0.00 0.110±0.02 0.097±0.00 0.017±0.00 0.732±0.00 0.070±0.00 0.294±0.15 0.086±0.00 0.027±0.01
ENSG00000264028 ENST00000577604 0.073±0.00 0.460±0.00 N/A 0.524±0.00 0.921±0.84 0.072±0.00 0.217±0.00 0.805±0.00 N/A 0.153±0.00 0.960±0.00 0.722±0.47 0.131±0.00 0.276±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000060992 ENSMUST00000100162 64.231±7.93 43.263±3.38 58.294±5.93 46.852±19.98 53.126±19.22 51.470±3.66 25.401±1.29 63.214±3.76 95.600±21.28 42.000±2.62 19.538±1.31 55.795±6.34 69.862±15.26 22.718±8.02
ENSMUSG00000063234 ENSMUST00000079824 0.133±0.06 0.054±0.02 0.014±0.00 0.183±0.08 0.069±0.05 0.097±0.07 0.043±0.02 0.212±0.08 0.469±0.21 0.089±0.03 0.040±0.00 0.163±0.10 0.066±0.03 0.142±0.07

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