C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coatomer protein complex, subunit zeta 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111481 COPZ1 9606 + 12:54301202-54351849 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262061 COPZ1-001 54325127-54351849 protein_coding
  ENST00000455864 COPZ1-004 54325139-54350913 protein_coding
  ENST00000548076 COPZ1-007 54301220-54343279 processed_transcript
  ENST00000548281 COPZ1-013 54325202-54350578 processed_transcript
  ENST00000548753 COPZ1-014 54325584-54350686 protein_coding
  ENST00000549043 COPZ1-002 54325129-54351102 protein_coding
  ENST00000549116 COPZ1-012 54325144-54350879 protein_coding
  ENST00000550027 COPZ1-016 54325139-54348132 retained_intron
  ENST00000550171 COPZ1-003 54325139-54351082 nonsense_mediated_decay
  ENST00000550713 COPZ1-015 54340372-54347840 protein_coding
  ENST00000551412 COPZ1-011 54325139-54347972 retained_intron
  ENST00000551779 COPZ1-005 54325151-54350621 protein_coding
  ENST00000551962 COPZ1-009 54325131-54350590 nonsense_mediated_decay
  ENST00000552218 COPZ1-010 54325131-54350690 protein_coding
  ENST00000552362 COPZ1-017 54325139-54350590 protein_coding
  ENST00000552848 COPZ1-006 54301202-54345475 protein_coding
  ENST00000553009 COPZ1-008 54325109-54342630 retained_intron
  ENST00000553231 COPZ1-018 54325139-54350354 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262061ENST00000455864ENST00000548753ENST00000549043ENST00000549116ENST00000550027ENST00000550171ENST00000550713ENST00000552362
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262061 24.350±0.00 39.988±0.00 3.299±0.00 17.147±12.32 18.590±16.26 18.257±11.30 10.919±8.81 22.921±18.02 17.406±15.25 23.377±20.48 15.338±9.16 37.722±23.55 57.473±19.17 24.683±14.14
ENST00000455864 N/A N/A 6.142±0.00 11.266±0.00 8.344±0.00 10.218±0.00 5.632±0.00 4.215±0.00 14.008±0.00 3.112±0.00 10.035±0.00 14.702±9.07 21.895±4.75 13.160±0.00
ENST00000548753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.894±0.00
ENST00000549043 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.730±0.00 N/A N/A N/A N/A
ENST00000549116 N/A N/A N/A N/A N/A N/A 15.582±0.00 25.441±0.00 32.886±0.00 N/A 11.855±0.00 N/A N/A N/A
ENST00000550027 N/A N/A N/A N/A N/A N/A N/A 10.413±0.00 N/A 9.002±0.00 3.834±0.00 18.485±12.53 39.569±0.00 14.528±0.00
ENST00000550171 8.533±0.00 N/A N/A N/A N/A 10.528±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550713 N/A N/A N/A N/A 6.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552362 N/A N/A N/A N/A N/A N/A 2.441±0.00 N/A N/A N/A N/A 38.106±0.00 47.606±0.00 9.867±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TK CIL_0002TK_0002 CGP 12:54292111-54351849
CIL_00003K CIL_00003K_0001 CGP 12:54301202-54364487

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005829 TAS cytosol
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0006891 ISS intra-Golgi vesicle-mediated transport
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030126 ISS COPI vesicle coat
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017844 copz1 coatomer protein complex, subunit zeta 1 protein_coding Danio_rerio
ENSMUSG00000060992 Copz1 coatomer protein complex, subunit zeta 1 protein_coding Mus_musculus

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