| Source ID |
Type |
Tax ID |
Position |
| ENSMUSG00000062380-ENSMUSG00000001482 |
CGP |
10090 |
8:123411424-123463270  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_00005N_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_00005N_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000140995' => 'differentially expressed in FDCP 8 homolog (mouse)',
'ENSG00000198211' => 'tubulin, beta 3 class III',
'ENSG00000258947' => 'tubulin, beta 3 class III',
'ENSG00000259006' => null,
'ENSMUSG00000001482' => 'differentially expressed in FDCP 8',
'ENSMUSG00000062380' => 'tubulin, beta 3 class III'
),
'gene_name_arr' => array(
'ENSG00000140995' => 'DEF8',
'ENSG00000198211' => 'TUBB3',
'ENSG00000258947' => 'TUBB3',
'ENSG00000259006' => 'RP11-566K11.4',
'ENSMUSG00000001482' => 'Def8',
'ENSMUSG00000062380' => 'Tubb3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 7 => 'Brain',
(int) 13 => 'Breast',
(int) 20 => 'Colon',
(int) 26 => 'Heart',
(int) 30 => 'Kidney',
(int) 35 => 'Liver',
(int) 41 => 'Lung',
(int) 47 => 'Muscle',
(int) 53 => 'Ovary',
(int) 59 => 'Placenta',
(int) 63 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 54,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000268676' => array(
'start' => '89948775',
'end' => '89968060',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-001'
),
'ENST00000418391' => array(
'start' => '89948795',
'end' => '89959366',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-002'
),
'ENST00000561741' => array(
'start' => '89948775',
'end' => '89959097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-014'
),
'ENST00000561784' => array(
'start' => '89948755',
'end' => '89959048',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DEF8-011'
),
'ENST00000561959' => array(
'start' => '89948795',
'end' => '89965906',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-022'
),
'ENST00000562044' => array(
'start' => '89958351',
'end' => '89959365',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-025'
),
'ENST00000562163' => array(
'start' => '89963798',
'end' => '89966044',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-029'
),
'ENST00000562578' => array(
'start' => '89948755',
'end' => '89960965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-018'
),
'ENST00000562986' => array(
'start' => '89948779',
'end' => '89960972',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-015'
),
'ENST00000563594' => array(
'start' => '89947925',
'end' => '89968060',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-003'
),
'ENST00000563795' => array(
'start' => '89948803',
'end' => '89966306',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-005'
),
'ENST00000563805' => array(
'start' => '89962053',
'end' => '89966343',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-028'
),
'ENST00000563848' => array(
'start' => '89958432',
'end' => '89962123',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-027'
),
'ENST00000564379' => array(
'start' => '89963840',
'end' => '89967633',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-010'
),
'ENST00000564836' => array(
'start' => '89954172',
'end' => '89955242',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-026'
),
'ENST00000566079' => array(
'start' => '89948755',
'end' => '89959039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-012'
),
'ENST00000566820' => array(
'start' => '89948755',
'end' => '89959050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-013'
),
'ENST00000567243' => array(
'start' => '89948795',
'end' => '89957592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-020'
),
'ENST00000567874' => array(
'start' => '89948795',
'end' => '89966168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-006'
),
'ENST00000567884' => array(
'start' => '89948795',
'end' => '89957608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-016'
),
'ENST00000567999' => array(
'start' => '89948697',
'end' => '89959091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-009'
),
'ENST00000568096' => array(
'start' => '89948795',
'end' => '89956887',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-019'
),
'ENST00000568760' => array(
'start' => '89957253',
'end' => '89960959',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-024'
),
'ENST00000569061' => array(
'start' => '89948795',
'end' => '89959044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-017'
),
'ENST00000569453' => array(
'start' => '89948791',
'end' => '89966066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-004'
),
'ENST00000569803' => array(
'start' => '89948795',
'end' => '89958041',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-021'
),
'ENST00000570182' => array(
'start' => '89948795',
'end' => '89968059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-007'
),
'ENST00000610455' => array(
'start' => '89948731',
'end' => '89959363',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-201'
),
'ENST00000617948' => array(
'start' => '89948731',
'end' => '89968059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-202'
),
'ENST00000556922' => array(
'start' => '89919165',
'end' => '89936092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-001'
),
'ENST00000315491' => array(
'start' => '89923279',
'end' => '89936097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-001'
),
'ENST00000553656' => array(
'start' => '89923338',
'end' => '89934798',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-007'
),
'ENST00000553967' => array(
'start' => '89923366',
'end' => '89934001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-011'
),
'ENST00000554116' => array(
'start' => '89923345',
'end' => '89932108',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TUBB3-008'
),
'ENST00000554336' => array(
'start' => '89923354',
'end' => '89934301',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-010'
),
'ENST00000554444' => array(
'start' => '89921851',
'end' => '89936091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-002'
),
'ENST00000554927' => array(
'start' => '89923345',
'end' => '89933017',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TUBB3-009'
),
'ENST00000555576' => array(
'start' => '89923345',
'end' => '89938761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-005'
),
'ENST00000555609' => array(
'start' => '89923359',
'end' => '89936010',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-013'
),
'ENST00000555810' => array(
'start' => '89921392',
'end' => '89935235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-004'
),
'ENST00000556536' => array(
'start' => '89923342',
'end' => '89935070',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-012'
),
'ENST00000556565' => array(
'start' => '89921916',
'end' => '89934806',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-003'
),
'ENST00000557262' => array(
'start' => '89923345',
'end' => '89934138',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-006'
),
'ENST00000557490' => array(
'start' => '89923345',
'end' => '89934971',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-014'
),
'ENST00000554623' => array(
'start' => '89919827',
'end' => '89922662',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-566K11.4-001'
),
'ENSMUST00000001522' => array(
'start' => '123442986',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-003'
),
'ENSMUST00000065534' => array(
'start' => '123442986',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-001'
),
'ENSMUST00000093049' => array(
'start' => '123442986',
'end' => '123460515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-005'
),
'ENSMUST00000108830' => array(
'start' => '123443308',
'end' => '123463262',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-002'
),
'ENSMUST00000108832' => array(
'start' => '123443005',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-004'
),
'ENSMUST00000124741' => array(
'start' => '123442996',
'end' => '123452822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-006'
),
'ENSMUST00000128424' => array(
'start' => '123443012',
'end' => '123455526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-007'
),
'ENSMUST00000132063' => array(
'start' => '123443008',
'end' => '123452758',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-008'
),
'ENSMUST00000071134' => array(
'start' => '123411424',
'end' => '123422015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tubb3-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_00005N_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_00005N_0001' => array(
'genes_in_region' => array(
'ENSG00000140995' => array(
[maximum depth reached]
),
'ENSG00000258947' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Testis',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Placenta',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Kidney',
(int) 16 => 'Muscle',
(int) 17 => 'Bladder',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Placenta',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Kidney',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Kidney',
(int) 36 => 'Breast',
(int) 37 => 'Heart',
(int) 38 => 'Liver',
(int) 39 => 'Placenta',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Testis',
(int) 63 => 'Testis',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Testis',
(int) 68 => 'Brain'
)
)
)
$gene_desc_arr = array(
'ENSG00000140995' => 'differentially expressed in FDCP 8 homolog (mouse)',
'ENSG00000198211' => 'tubulin, beta 3 class III',
'ENSG00000258947' => 'tubulin, beta 3 class III',
'ENSG00000259006' => null,
'ENSMUSG00000001482' => 'differentially expressed in FDCP 8',
'ENSMUSG00000062380' => 'tubulin, beta 3 class III'
)
$gene_name_arr = array(
'ENSG00000140995' => 'DEF8',
'ENSG00000198211' => 'TUBB3',
'ENSG00000258947' => 'TUBB3',
'ENSG00000259006' => 'RP11-566K11.4',
'ENSMUSG00000001482' => 'Def8',
'ENSMUSG00000062380' => 'Tubb3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00005N_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '89921392',
'seq_end' => '89968060',
'region_length' => '46668',
'region_type' => 'CGP',
'el_id' => 'ENSG00000258947-ENSG00000140995'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00005N_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '123411424',
'seq_end' => '123463270',
'region_length' => '51846',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000062380-ENSMUSG00000001482'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 7 => 'Brain',
(int) 13 => 'Breast',
(int) 20 => 'Colon',
(int) 26 => 'Heart',
(int) 30 => 'Kidney',
(int) 35 => 'Liver',
(int) 41 => 'Lung',
(int) 47 => 'Muscle',
(int) 53 => 'Ovary',
(int) 59 => 'Placenta',
(int) 63 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 54
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000268676' => array(
'start' => '89948775',
'end' => '89968060',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-001'
),
'ENST00000418391' => array(
'start' => '89948795',
'end' => '89959366',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-002'
),
'ENST00000561741' => array(
'start' => '89948775',
'end' => '89959097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-014'
),
'ENST00000561784' => array(
'start' => '89948755',
'end' => '89959048',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DEF8-011'
),
'ENST00000561959' => array(
'start' => '89948795',
'end' => '89965906',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-022'
),
'ENST00000562044' => array(
'start' => '89958351',
'end' => '89959365',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-025'
),
'ENST00000562163' => array(
'start' => '89963798',
'end' => '89966044',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-029'
),
'ENST00000562578' => array(
'start' => '89948755',
'end' => '89960965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-018'
),
'ENST00000562986' => array(
'start' => '89948779',
'end' => '89960972',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-015'
),
'ENST00000563594' => array(
'start' => '89947925',
'end' => '89968060',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-003'
),
'ENST00000563795' => array(
'start' => '89948803',
'end' => '89966306',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-005'
),
'ENST00000563805' => array(
'start' => '89962053',
'end' => '89966343',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-028'
),
'ENST00000563848' => array(
'start' => '89958432',
'end' => '89962123',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-027'
),
'ENST00000564379' => array(
'start' => '89963840',
'end' => '89967633',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-010'
),
'ENST00000564836' => array(
'start' => '89954172',
'end' => '89955242',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-026'
),
'ENST00000566079' => array(
'start' => '89948755',
'end' => '89959039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-012'
),
'ENST00000566820' => array(
'start' => '89948755',
'end' => '89959050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-013'
),
'ENST00000567243' => array(
'start' => '89948795',
'end' => '89957592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-020'
),
'ENST00000567874' => array(
'start' => '89948795',
'end' => '89966168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-006'
),
'ENST00000567884' => array(
'start' => '89948795',
'end' => '89957608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-016'
),
'ENST00000567999' => array(
'start' => '89948697',
'end' => '89959091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-009'
),
'ENST00000568096' => array(
'start' => '89948795',
'end' => '89956887',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-019'
),
'ENST00000568760' => array(
'start' => '89957253',
'end' => '89960959',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-024'
),
'ENST00000569061' => array(
'start' => '89948795',
'end' => '89959044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-017'
),
'ENST00000569453' => array(
'start' => '89948791',
'end' => '89966066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-004'
),
'ENST00000569803' => array(
'start' => '89948795',
'end' => '89958041',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-021'
),
'ENST00000570182' => array(
'start' => '89948795',
'end' => '89968059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-007'
),
'ENST00000610455' => array(
'start' => '89948731',
'end' => '89959363',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-201'
),
'ENST00000617948' => array(
'start' => '89948731',
'end' => '89968059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-202'
),
'ENST00000556922' => array(
'start' => '89919165',
'end' => '89936092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-001'
),
'ENST00000315491' => array(
'start' => '89923279',
'end' => '89936097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-001'
),
'ENST00000553656' => array(
'start' => '89923338',
'end' => '89934798',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-007'
),
'ENST00000553967' => array(
'start' => '89923366',
'end' => '89934001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-011'
),
'ENST00000554116' => array(
'start' => '89923345',
'end' => '89932108',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TUBB3-008'
),
'ENST00000554336' => array(
'start' => '89923354',
'end' => '89934301',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-010'
),
'ENST00000554444' => array(
'start' => '89921851',
'end' => '89936091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-002'
),
'ENST00000554927' => array(
'start' => '89923345',
'end' => '89933017',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TUBB3-009'
),
'ENST00000555576' => array(
'start' => '89923345',
'end' => '89938761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-005'
),
'ENST00000555609' => array(
'start' => '89923359',
'end' => '89936010',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-013'
),
'ENST00000555810' => array(
'start' => '89921392',
'end' => '89935235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-004'
),
'ENST00000556536' => array(
'start' => '89923342',
'end' => '89935070',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-012'
),
'ENST00000556565' => array(
'start' => '89921916',
'end' => '89934806',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-003'
),
'ENST00000557262' => array(
'start' => '89923345',
'end' => '89934138',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-006'
),
'ENST00000557490' => array(
'start' => '89923345',
'end' => '89934971',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-014'
),
'ENST00000554623' => array(
'start' => '89919827',
'end' => '89922662',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-566K11.4-001'
),
'ENSMUST00000001522' => array(
'start' => '123442986',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-003'
),
'ENSMUST00000065534' => array(
'start' => '123442986',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-001'
),
'ENSMUST00000093049' => array(
'start' => '123442986',
'end' => '123460515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-005'
),
'ENSMUST00000108830' => array(
'start' => '123443308',
'end' => '123463262',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-002'
),
'ENSMUST00000108832' => array(
'start' => '123443005',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-004'
),
'ENSMUST00000124741' => array(
'start' => '123442996',
'end' => '123452822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-006'
),
'ENSMUST00000128424' => array(
'start' => '123443012',
'end' => '123455526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-007'
),
'ENSMUST00000132063' => array(
'start' => '123443008',
'end' => '123452758',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-008'
),
'ENSMUST00000071134' => array(
'start' => '123411424',
'end' => '123422015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tubb3-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_00005N_0001' => array(
'genes_in_region' => array(
'ENSG00000140995' => array(
[maximum depth reached]
),
'ENSG00000258947' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Testis',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Placenta',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Kidney',
(int) 16 => 'Muscle',
(int) 17 => 'Bladder',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Placenta',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Kidney',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Kidney',
(int) 36 => 'Breast',
(int) 37 => 'Heart',
(int) 38 => 'Liver',
(int) 39 => 'Placenta',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Testis',
(int) 63 => 'Testis',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Testis',
(int) 68 => 'Brain'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_00005N_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '123411424',
'seq_end' => '123463270',
'region_length' => '51846',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000062380-ENSMUSG00000001482'
)
)
$gene_el = array(
'ENST00000315491' => array(
'Brain' => array(
'average_FPKM' => '79.507',
'stddev_FPKM' => '48.46'
),
'Breast' => array(
'average_FPKM' => '4.736',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '18.848',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '53.133',
'stddev_FPKM' => '0.00'
)
),
'ENST00000553656' => array(),
'ENST00000553967' => array(),
'ENST00000554116' => array(),
'ENST00000554336' => array(),
'ENST00000554444' => array(),
'ENST00000554927' => array(),
'ENST00000555576' => array(),
'ENST00000555609' => array(),
'ENST00000555810' => array(
'Brain' => array(
'average_FPKM' => '113.426',
'stddev_FPKM' => '0.00'
)
),
'ENST00000556536' => array(),
'ENST00000556565' => array(),
'ENST00000557262' => array(),
'ENST00000557490' => array()
)
$gene_key = 'ENSG00000258947'
$is_first = false
$tran_el = array()
$tran_key = 'ENST00000557490'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_00005N_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000140995' => 'differentially expressed in FDCP 8 homolog (mouse)',
'ENSG00000198211' => 'tubulin, beta 3 class III',
'ENSG00000258947' => 'tubulin, beta 3 class III',
'ENSG00000259006' => null,
'ENSMUSG00000001482' => 'differentially expressed in FDCP 8',
'ENSMUSG00000062380' => 'tubulin, beta 3 class III'
),
'gene_name_arr' => array(
'ENSG00000140995' => 'DEF8',
'ENSG00000198211' => 'TUBB3',
'ENSG00000258947' => 'TUBB3',
'ENSG00000259006' => 'RP11-566K11.4',
'ENSMUSG00000001482' => 'Def8',
'ENSMUSG00000062380' => 'Tubb3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 7 => 'Brain',
(int) 13 => 'Breast',
(int) 20 => 'Colon',
(int) 26 => 'Heart',
(int) 30 => 'Kidney',
(int) 35 => 'Liver',
(int) 41 => 'Lung',
(int) 47 => 'Muscle',
(int) 53 => 'Ovary',
(int) 59 => 'Placenta',
(int) 63 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 54,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000268676' => array(
'start' => '89948775',
'end' => '89968060',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-001'
),
'ENST00000418391' => array(
'start' => '89948795',
'end' => '89959366',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-002'
),
'ENST00000561741' => array(
'start' => '89948775',
'end' => '89959097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-014'
),
'ENST00000561784' => array(
'start' => '89948755',
'end' => '89959048',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DEF8-011'
),
'ENST00000561959' => array(
'start' => '89948795',
'end' => '89965906',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-022'
),
'ENST00000562044' => array(
'start' => '89958351',
'end' => '89959365',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-025'
),
'ENST00000562163' => array(
'start' => '89963798',
'end' => '89966044',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-029'
),
'ENST00000562578' => array(
'start' => '89948755',
'end' => '89960965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-018'
),
'ENST00000562986' => array(
'start' => '89948779',
'end' => '89960972',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-015'
),
'ENST00000563594' => array(
'start' => '89947925',
'end' => '89968060',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-003'
),
'ENST00000563795' => array(
'start' => '89948803',
'end' => '89966306',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-005'
),
'ENST00000563805' => array(
'start' => '89962053',
'end' => '89966343',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-028'
),
'ENST00000563848' => array(
'start' => '89958432',
'end' => '89962123',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-027'
),
'ENST00000564379' => array(
'start' => '89963840',
'end' => '89967633',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-010'
),
'ENST00000564836' => array(
'start' => '89954172',
'end' => '89955242',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-026'
),
'ENST00000566079' => array(
'start' => '89948755',
'end' => '89959039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-012'
),
'ENST00000566820' => array(
'start' => '89948755',
'end' => '89959050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-013'
),
'ENST00000567243' => array(
'start' => '89948795',
'end' => '89957592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-020'
),
'ENST00000567874' => array(
'start' => '89948795',
'end' => '89966168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-006'
),
'ENST00000567884' => array(
'start' => '89948795',
'end' => '89957608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-016'
),
'ENST00000567999' => array(
'start' => '89948697',
'end' => '89959091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-009'
),
'ENST00000568096' => array(
'start' => '89948795',
'end' => '89956887',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-019'
),
'ENST00000568760' => array(
'start' => '89957253',
'end' => '89960959',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-024'
),
'ENST00000569061' => array(
'start' => '89948795',
'end' => '89959044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-017'
),
'ENST00000569453' => array(
'start' => '89948791',
'end' => '89966066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-004'
),
'ENST00000569803' => array(
'start' => '89948795',
'end' => '89958041',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-021'
),
'ENST00000570182' => array(
'start' => '89948795',
'end' => '89968059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-007'
),
'ENST00000610455' => array(
'start' => '89948731',
'end' => '89959363',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-201'
),
'ENST00000617948' => array(
'start' => '89948731',
'end' => '89968059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-202'
),
'ENST00000556922' => array(
'start' => '89919165',
'end' => '89936092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-001'
),
'ENST00000315491' => array(
'start' => '89923279',
'end' => '89936097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-001'
),
'ENST00000553656' => array(
'start' => '89923338',
'end' => '89934798',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-007'
),
'ENST00000553967' => array(
'start' => '89923366',
'end' => '89934001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-011'
),
'ENST00000554116' => array(
'start' => '89923345',
'end' => '89932108',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TUBB3-008'
),
'ENST00000554336' => array(
'start' => '89923354',
'end' => '89934301',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-010'
),
'ENST00000554444' => array(
'start' => '89921851',
'end' => '89936091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-002'
),
'ENST00000554927' => array(
'start' => '89923345',
'end' => '89933017',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TUBB3-009'
),
'ENST00000555576' => array(
'start' => '89923345',
'end' => '89938761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-005'
),
'ENST00000555609' => array(
'start' => '89923359',
'end' => '89936010',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-013'
),
'ENST00000555810' => array(
'start' => '89921392',
'end' => '89935235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-004'
),
'ENST00000556536' => array(
'start' => '89923342',
'end' => '89935070',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-012'
),
'ENST00000556565' => array(
'start' => '89921916',
'end' => '89934806',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-003'
),
'ENST00000557262' => array(
'start' => '89923345',
'end' => '89934138',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-006'
),
'ENST00000557490' => array(
'start' => '89923345',
'end' => '89934971',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-014'
),
'ENST00000554623' => array(
'start' => '89919827',
'end' => '89922662',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-566K11.4-001'
),
'ENSMUST00000001522' => array(
'start' => '123442986',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-003'
),
'ENSMUST00000065534' => array(
'start' => '123442986',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-001'
),
'ENSMUST00000093049' => array(
'start' => '123442986',
'end' => '123460515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-005'
),
'ENSMUST00000108830' => array(
'start' => '123443308',
'end' => '123463262',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-002'
),
'ENSMUST00000108832' => array(
'start' => '123443005',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-004'
),
'ENSMUST00000124741' => array(
'start' => '123442996',
'end' => '123452822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-006'
),
'ENSMUST00000128424' => array(
'start' => '123443012',
'end' => '123455526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-007'
),
'ENSMUST00000132063' => array(
'start' => '123443008',
'end' => '123452758',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-008'
),
'ENSMUST00000071134' => array(
'start' => '123411424',
'end' => '123422015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tubb3-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_00005N_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_00005N_0001' => array(
'genes_in_region' => array(
'ENSG00000140995' => array(
[maximum depth reached]
),
'ENSG00000258947' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Testis',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Placenta',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Kidney',
(int) 16 => 'Muscle',
(int) 17 => 'Bladder',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Placenta',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Kidney',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Kidney',
(int) 36 => 'Breast',
(int) 37 => 'Heart',
(int) 38 => 'Liver',
(int) 39 => 'Placenta',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Testis',
(int) 63 => 'Testis',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Testis',
(int) 68 => 'Brain'
)
)
)
$gene_desc_arr = array(
'ENSG00000140995' => 'differentially expressed in FDCP 8 homolog (mouse)',
'ENSG00000198211' => 'tubulin, beta 3 class III',
'ENSG00000258947' => 'tubulin, beta 3 class III',
'ENSG00000259006' => null,
'ENSMUSG00000001482' => 'differentially expressed in FDCP 8',
'ENSMUSG00000062380' => 'tubulin, beta 3 class III'
)
$gene_name_arr = array(
'ENSG00000140995' => 'DEF8',
'ENSG00000198211' => 'TUBB3',
'ENSG00000258947' => 'TUBB3',
'ENSG00000259006' => 'RP11-566K11.4',
'ENSMUSG00000001482' => 'Def8',
'ENSMUSG00000062380' => 'Tubb3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00005N_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '89921392',
'seq_end' => '89968060',
'region_length' => '46668',
'region_type' => 'CGP',
'el_id' => 'ENSG00000258947-ENSG00000140995'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_00005N_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '123411424',
'seq_end' => '123463270',
'region_length' => '51846',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000062380-ENSMUSG00000001482'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 4 => 'Bladder',
(int) 7 => 'Brain',
(int) 13 => 'Breast',
(int) 20 => 'Colon',
(int) 26 => 'Heart',
(int) 30 => 'Kidney',
(int) 35 => 'Liver',
(int) 41 => 'Lung',
(int) 47 => 'Muscle',
(int) 53 => 'Ovary',
(int) 59 => 'Placenta',
(int) 63 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 54
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000268676' => array(
'start' => '89948775',
'end' => '89968060',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-001'
),
'ENST00000418391' => array(
'start' => '89948795',
'end' => '89959366',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-002'
),
'ENST00000561741' => array(
'start' => '89948775',
'end' => '89959097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-014'
),
'ENST00000561784' => array(
'start' => '89948755',
'end' => '89959048',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'DEF8-011'
),
'ENST00000561959' => array(
'start' => '89948795',
'end' => '89965906',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-022'
),
'ENST00000562044' => array(
'start' => '89958351',
'end' => '89959365',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-025'
),
'ENST00000562163' => array(
'start' => '89963798',
'end' => '89966044',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-029'
),
'ENST00000562578' => array(
'start' => '89948755',
'end' => '89960965',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-018'
),
'ENST00000562986' => array(
'start' => '89948779',
'end' => '89960972',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-015'
),
'ENST00000563594' => array(
'start' => '89947925',
'end' => '89968060',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-003'
),
'ENST00000563795' => array(
'start' => '89948803',
'end' => '89966306',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-005'
),
'ENST00000563805' => array(
'start' => '89962053',
'end' => '89966343',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-028'
),
'ENST00000563848' => array(
'start' => '89958432',
'end' => '89962123',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-027'
),
'ENST00000564379' => array(
'start' => '89963840',
'end' => '89967633',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-010'
),
'ENST00000564836' => array(
'start' => '89954172',
'end' => '89955242',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-026'
),
'ENST00000566079' => array(
'start' => '89948755',
'end' => '89959039',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-012'
),
'ENST00000566820' => array(
'start' => '89948755',
'end' => '89959050',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-013'
),
'ENST00000567243' => array(
'start' => '89948795',
'end' => '89957592',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-020'
),
'ENST00000567874' => array(
'start' => '89948795',
'end' => '89966168',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-006'
),
'ENST00000567884' => array(
'start' => '89948795',
'end' => '89957608',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-016'
),
'ENST00000567999' => array(
'start' => '89948697',
'end' => '89959091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-009'
),
'ENST00000568096' => array(
'start' => '89948795',
'end' => '89956887',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-019'
),
'ENST00000568760' => array(
'start' => '89957253',
'end' => '89960959',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'DEF8-024'
),
'ENST00000569061' => array(
'start' => '89948795',
'end' => '89959044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-017'
),
'ENST00000569453' => array(
'start' => '89948791',
'end' => '89966066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-004'
),
'ENST00000569803' => array(
'start' => '89948795',
'end' => '89958041',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'DEF8-021'
),
'ENST00000570182' => array(
'start' => '89948795',
'end' => '89968059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-007'
),
'ENST00000610455' => array(
'start' => '89948731',
'end' => '89959363',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-201'
),
'ENST00000617948' => array(
'start' => '89948731',
'end' => '89968059',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'DEF8-202'
),
'ENST00000556922' => array(
'start' => '89919165',
'end' => '89936092',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-001'
),
'ENST00000315491' => array(
'start' => '89923279',
'end' => '89936097',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-001'
),
'ENST00000553656' => array(
'start' => '89923338',
'end' => '89934798',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-007'
),
'ENST00000553967' => array(
'start' => '89923366',
'end' => '89934001',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-011'
),
'ENST00000554116' => array(
'start' => '89923345',
'end' => '89932108',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'TUBB3-008'
),
'ENST00000554336' => array(
'start' => '89923354',
'end' => '89934301',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-010'
),
'ENST00000554444' => array(
'start' => '89921851',
'end' => '89936091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-002'
),
'ENST00000554927' => array(
'start' => '89923345',
'end' => '89933017',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'TUBB3-009'
),
'ENST00000555576' => array(
'start' => '89923345',
'end' => '89938761',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-005'
),
'ENST00000555609' => array(
'start' => '89923359',
'end' => '89936010',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-013'
),
'ENST00000555810' => array(
'start' => '89921392',
'end' => '89935235',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-004'
),
'ENST00000556536' => array(
'start' => '89923342',
'end' => '89935070',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-012'
),
'ENST00000556565' => array(
'start' => '89921916',
'end' => '89934806',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'TUBB3-003'
),
'ENST00000557262' => array(
'start' => '89923345',
'end' => '89934138',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-006'
),
'ENST00000557490' => array(
'start' => '89923345',
'end' => '89934971',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'TUBB3-014'
),
'ENST00000554623' => array(
'start' => '89919827',
'end' => '89922662',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-566K11.4-001'
),
'ENSMUST00000001522' => array(
'start' => '123442986',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-003'
),
'ENSMUST00000065534' => array(
'start' => '123442986',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-001'
),
'ENSMUST00000093049' => array(
'start' => '123442986',
'end' => '123460515',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-005'
),
'ENSMUST00000108830' => array(
'start' => '123443308',
'end' => '123463262',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-002'
),
'ENSMUST00000108832' => array(
'start' => '123443005',
'end' => '123463270',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-004'
),
'ENSMUST00000124741' => array(
'start' => '123442996',
'end' => '123452822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-006'
),
'ENSMUST00000128424' => array(
'start' => '123443012',
'end' => '123455526',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-007'
),
'ENSMUST00000132063' => array(
'start' => '123443008',
'end' => '123452758',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Def8-008'
),
'ENSMUST00000071134' => array(
'start' => '123411424',
'end' => '123422015',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Tubb3-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_00005N_0001' => array(
'genes_in_region' => array(
'ENSG00000140995' => array(
[maximum depth reached]
),
'ENSG00000258947' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Brain',
(int) 2 => 'Breast',
(int) 3 => 'Colon',
(int) 4 => 'Kidney',
(int) 5 => 'Liver',
(int) 6 => 'Lung',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Testis',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Placenta',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Kidney',
(int) 16 => 'Muscle',
(int) 17 => 'Bladder',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Breast',
(int) 21 => 'Colon',
(int) 22 => 'Placenta',
(int) 23 => 'Bladder',
(int) 24 => 'Brain',
(int) 25 => 'Breast',
(int) 26 => 'Colon',
(int) 27 => 'Kidney',
(int) 28 => 'Lung',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Ovary',
(int) 32 => 'Testis',
(int) 33 => 'Ovary',
(int) 34 => 'Testis',
(int) 35 => 'Kidney',
(int) 36 => 'Breast',
(int) 37 => 'Heart',
(int) 38 => 'Liver',
(int) 39 => 'Placenta',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Adrenal',
(int) 43 => 'Bladder',
(int) 44 => 'Brain',
(int) 45 => 'Breast',
(int) 46 => 'Colon',
(int) 47 => 'Heart',
(int) 48 => 'Kidney',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Ovary',
(int) 53 => 'Placenta',
(int) 54 => 'Adipose',
(int) 55 => 'Adrenal',
(int) 56 => 'Breast',
(int) 57 => 'Colon',
(int) 58 => 'Heart',
(int) 59 => 'Liver',
(int) 60 => 'Lung',
(int) 61 => 'Muscle',
(int) 62 => 'Testis',
(int) 63 => 'Testis',
(int) 64 => 'Brain',
(int) 65 => 'Breast',
(int) 66 => 'Colon',
(int) 67 => 'Testis',
(int) 68 => 'Brain'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_00005N_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '123411424',
'seq_end' => '123463270',
'region_length' => '51846',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000062380-ENSMUSG00000001482'
)
)
$gene_el = array(
'ENST00000315491' => array(
'Brain' => array(
'average_FPKM' => '79.507',
'stddev_FPKM' => '48.46'
),
'Breast' => array(
'average_FPKM' => '4.736',
'stddev_FPKM' => '0.00'
),
'Colon' => array(
'average_FPKM' => '18.848',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '53.133',
'stddev_FPKM' => '0.00'
)
),
'ENST00000553656' => array(),
'ENST00000553967' => array(),
'ENST00000554116' => array(),
'ENST00000554336' => array(),
'ENST00000554444' => array(),
'ENST00000554927' => array(),
'ENST00000555576' => array(),
'ENST00000555609' => array(),
'ENST00000555810' => array(
'Brain' => array(
'average_FPKM' => '113.426',
'stddev_FPKM' => '0.00'
)
),
'ENST00000556536' => array(),
'ENST00000556565' => array(),
'ENST00000557262' => array(),
'ENST00000557490' => array()
)
$gene_key = 'ENSG00000258947'
$is_first = false
$tran_el = array()
$tran_key = 'ENST00000557490'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(DEF8)