C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 3 class III
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000555609 TUBB3-013 ENSG00000258947 9606 + 16:89923359-89936010 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005N CIL_00005N_0001 CGP 16:89921392-89968060

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005525 IEA GTP binding
GO:0005874 IEA microtubule
GO:0007017 IEA microtubule-based process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 1629
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1410
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 1280
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 1256
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 1188
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1134
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1131
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1101
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1096
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1096
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 1072
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1062
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1059
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1053
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 1051
ENSDART00000024135 protein_coding Danio_rerio 0 944
ENSDART00000129104 protein_coding Danio_rerio 0 944
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 933
ENSMUST00000117711 Gm11892-001 processed_pseudogene Mus_musculus 0 662
ENSDART00000147110 tubb4b-002 processed_transcript Danio_rerio 0 652
ENSMUST00000160140 Gm16165-001 processed_pseudogene Mus_musculus 0 606
ENSDART00000134744 tubb4b-003 processed_transcript Danio_rerio 0 606
ENSMUST00000173253 Tubb5-004 retained_intron Mus_musculus 0 503

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