C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 3 class III
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315491 TUBB3-001 ENSG00000258947 9606 + 16:89923279-89936097 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonTestisENST00000315491
Transcript ID Brain Breast Colon Testis
ENST00000315491 79.507±48.46 4.736±0.00 18.848±0.00 53.133±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005N CIL_00005N_0001 CGP 16:89921392-89968060

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IEA:IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0007067 IEA mitotic nuclear division
GO:0007411 IMP axon guidance
GO:0015630 IEA microtubule cytoskeleton
GO:0030182 IEA neuron differentiation
GO:0030424 IEA axon
GO:0030425 ISS dendrite
GO:0042277 IEA peptide binding
GO:0043025 IEA neuronal cell body
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0070062 IDA extracellular vesicular exosome
GO:0071944 IEA cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 1858
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1585
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 1391
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 1386
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 1319
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1245
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1218
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 1192
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1184
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1179
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1168
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 1160
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1153
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1147
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1142
ENSDART00000024135 protein_coding Danio_rerio 0 1064
ENSDART00000129104 protein_coding Danio_rerio 0 979
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 933
ENSMUST00000117711 Gm11892-001 processed_pseudogene Mus_musculus 0 662
ENSDART00000147110 tubb4b-002 processed_transcript Danio_rerio 0 652
ENSMUST00000160140 Gm16165-001 processed_pseudogene Mus_musculus 0 606
ENSDART00000134744 tubb4b-003 processed_transcript Danio_rerio 0 606
ENSMUST00000173253 Tubb5-004 retained_intron Mus_musculus 0 544

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