C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00006Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058372-ENSDARG00000058372 CGP 7955 13:6213585-6251002
GeneTranscriptPositionBiotype
ENSDARG00000014946 (angpt2a)
angiopoietin 2a 		ENSDART00000025463 (angpt2a-201) 6230710-6244176 protein_coding
ENSDARG00000058372 (mcph1)
microcephalin 1 		ENSDART00000122491 (mcph1-003) 6213686-6218346 retained_intron
ENSDART00000148907 (mcph1-001) 6213585-6251002 protein_coding
ENSDART00000149139 (mcph1-006) 6217438-6249052 processed_transcript
ENSDART00000149619 (mcph1-005) 6213637-6217654 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00006Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147316-ENSG00000147316 CGP 9606 8:6406592-6643623
GeneTranscriptPositionBiotype
ENSG00000091879 (ANGPT2)
angiopoietin 2 		ENST00000325203 (ANGPT2-001) 6499651-6563409 protein_coding
ENST00000338312 (ANGPT2-002) 6503080-6563044 protein_coding
ENST00000523120 (ANGPT2-003) 6507564-6563245 protein_coding
ENSG00000147316 (MCPH1)
microcephalin 1 		ENST00000344683 (MCPH1-001) 6406592-6643623 protein_coding
ENST00000519221 (MCPH1-007) 6477266-6621671 processed_transcript
ENST00000519480 (MCPH1-002) 6406596-6446567 protein_coding
ENST00000521129 (MCPH1-004) 6477359-6621621 processed_transcript
ENST00000521175 (MCPH1-005) 6621452-6643370 processed_transcript
ENST00000522020 (MCPH1-006) 6455202-6494542 processed_transcript
ENST00000522905 (MCPH1-003) 6406643-6445890 protein_coding
ENSG00000253550 (RP11-115C21.4)
 ENST00000514530 (RP11-115C21.4-001) 6473845-6474288 processed_pseudogene
ENSG00000271743 (CTD-2541M15.3)
 ENST00000607368 (CTD-2541M15.3-001) 6615604-6617198 lincRNA
ENSG00000276580 (MIR8055)
microRNA 8055 		ENST00000610739 (MIR8055-201) 6622124-6622220 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00006Z_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039842-ENSMUSG00000039842 CGP 10090 8:18595131-18803189
GeneTranscriptPositionBiotype
ENSMUSG00000031465 (Angpt2)
angiopoietin 2 		ENSMUST00000033846 (Angpt2-001) 18690263-18741562 protein_coding
ENSMUST00000170200 (Angpt2-002) 18692087-18699547 processed_transcript
ENSMUSG00000039842 (Mcph1)
microcephaly, primary autosomal recessive 1 		ENSMUST00000039412 (Mcph1-001) 18595131-18803189 protein_coding
ENSMUST00000124910 (Mcph1-002) 18595164-18712939 nonsense_mediated_decay
ENSMUST00000133417 (Mcph1-005) 18625563-18631880 protein_coding
ENSMUST00000141244 (Mcph1-006) 18632592-18652990 protein_coding
ENSMUST00000146819 (Mcph1-004) 18595582-18632901 protein_coding
ENSMUST00000153133 (Mcph1-003) 18595576-18689953 retained_intron
ENSMUSG00000090334 (Gm17149)
predicted gene 17149 		ENSMUST00000164712 (Gm17149-001) 18656615-18656989 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006Z_0001ENSDARG00000014946ENSDART00000025463ENSDARG00000058372ENSDART00000122491ENSDART00000148907ENSDART00000149139ENSDART00000149619CIL_00006Z_0002ENSG00000091879ENST00000325203ENST00000338312ENST00000523120ENSG00000147316ENST00000344683ENST00000519221ENST00000519480ENST00000521129ENST00000521175ENST00000522020ENST00000522905ENSG00000253550ENST00000514530ENSG00000271743ENST00000607368ENSG00000276580ENST00000610739CIL_00006Z_0003ENSMUSG00000031465ENSMUST00000033846ENSMUST00000170200ENSMUSG00000039842ENSMUST00000039412ENSMUST00000124910ENSMUST00000133417ENSMUST00000141244ENSMUST00000146819ENSMUST00000153133ENSMUSG00000090334ENSMUST00000164712
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006Z_0001ENSDARG00000014946ENSDART00000025463ENSDARG00000058372ENSDART00000122491ENSDART00000148907ENSDART00000149139ENSDART00000149619CIL_00006Z_0002ENSG00000091879ENST00000325203ENST00000338312ENST00000523120ENSG00000147316ENST00000344683ENST00000519480ENST00000522905ENSG00000253550ENST00000514530ENSG00000271743ENST00000607368ENSG00000276580ENST00000610739CIL_00006Z_0003ENSMUSG00000031465ENSMUST00000033846ENSMUST00000170200ENSMUSG00000039842ENSMUST00000039412ENSMUST00000124910ENSMUST00000146819ENSMUST00000153133ENSMUSG00000090334ENSMUST00000164712
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014946 ENSDART00000025463 N/A N/A N/A 0.259±0.01 N/A N/A 0.229±0.00 N/A N/A N/A 0.467±0.00 N/A N/A N/A
ENSDARG00000058372 ENSDART00000122491 N/A N/A N/A 0.215±0.05 N/A N/A 0.085±0.00 0.404±0.00 0.183±0.00 N/A N/A N/A N/A N/A
ENSDART00000148907 N/A N/A N/A 0.097±0.00 N/A N/A 0.082±0.00 1.423±0.97 N/A N/A N/A N/A N/A N/A
ENSDART00000149139 N/A N/A N/A N/A N/A N/A 1.267±1.12 4.076±0.97 0.199±0.00 N/A N/A N/A N/A N/A
ENSDART00000149619 N/A N/A N/A N/A N/A N/A 0.185±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091879 ENST00000325203 N/A N/A 0.284±0.00 0.474±0.00 1.038±0.00 0.420±0.00 0.376±0.00 0.552±0.00 0.894±0.65 1.337±0.00 N/A 0.693±0.00 1.254±0.00 N/A
ENST00000338312 8.363±0.00 5.688±0.00 N/A N/A 3.169±0.00 12.431±0.00 N/A N/A N/A 3.247±0.00 N/A 2.359±0.00 3.255±0.98 N/A
ENST00000523120 N/A N/A N/A N/A 1.118±0.00 N/A N/A 0.376±0.00 1.086±0.00 N/A N/A 1.261±0.00 N/A N/A
ENSG00000147316 ENST00000344683 2.835±0.00 3.677±0.00 0.522±0.00 1.334±0.65 1.070±0.00 1.281±0.00 2.111±0.00 2.009±0.00 0.997±0.00 1.742±0.00 4.341±0.00 1.666±0.28 2.034±0.35 4.123±0.43
ENST00000519221 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519480 N/A N/A N/A 0.711±0.00 1.197±0.00 1.021±0.00 0.824±0.00 1.175±0.38 0.998±0.37 N/A N/A 1.683±0.23 1.647±0.00 N/A
ENST00000521129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522905 N/A N/A 0.749±0.00 N/A N/A N/A N/A N/A N/A N/A 0.409±0.00 N/A N/A 3.106±0.00
ENSG00000253550 ENST00000514530 0.092±0.00 N/A 2.851±0.00 N/A 0.462±0.44 1.219±0.00 0.054±0.01 N/A 0.381±0.00 N/A N/A 0.038±0.00 0.079±0.04 0.156±0.00
ENSG00000271743 ENST00000607368 0.040±0.00 0.169±0.00 0.123±0.00 0.582±0.13 0.049±0.01 0.083±0.02 0.073±0.04 0.051±0.03 0.156±0.00 N/A N/A 0.333±0.16 0.097±0.03 0.274±0.11
ENSG00000276580 ENST00000610739 0.918±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.050±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031465 ENSMUST00000033846 3.675±0.97 0.989±0.37 3.302±0.68 1.318±0.45 3.780±0.89 0.774±0.19 1.097±0.14 7.186±0.43 0.338±0.21 5.133±1.24 0.551±0.08 5.497±0.90 7.819±3.67 0.267±0.10
ENSMUST00000170200 N/A 1.032±0.00 N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A 13.878±0.00 53.462±36.41 1.865±1.22
ENSMUSG00000039842 ENSMUST00000039412 2.559±0.53 0.885±0.11 1.079±0.12 1.790±0.21 1.203±0.56 0.729±0.10 0.695±0.10 0.676±0.21 2.410±2.20 0.963±0.07 0.692±0.19 2.526±0.86 2.742±1.88 1.452±0.55
ENSMUST00000124910 N/A N/A N/A N/A 0.320±0.07 0.127±0.03 N/A 0.094±0.00 N/A N/A N/A 0.641±0.19 N/A 0.492±0.06
ENSMUST00000133417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146819 N/A N/A N/A 0.746±0.00 N/A N/A N/A N/A N/A N/A 0.220±0.00 N/A 1.502±0.75 N/A
ENSMUST00000153133 N/A N/A N/A N/A N/A N/A N/A 0.306±0.10 N/A N/A N/A N/A 0.311±0.00 N/A
ENSMUSG00000090334 ENSMUST00000164712 0.298±0.15 N/A 0.091±0.01 0.294±0.06 1.191±0.85 N/A 0.245±0.09 0.264±0.10 0.106±0.04 0.464±0.15 N/A 0.886±0.55 0.338±0.28 0.189±0.00

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