C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: microcephalin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344683 MCPH1-001 ENSG00000147316 9606 + 8:6406592-6643623 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344683
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344683 2.835±0.00 3.677±0.00 0.522±0.00 1.334±0.65 1.070±0.00 1.281±0.00 2.111±0.00 2.009±0.00 0.997±0.00 1.742±0.00 4.341±0.00 1.666±0.28 2.034±0.35 4.123±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000LC CIL_0000LC_0001 CGP 8:2935353-6643623
CIL_0008KU CIL_0008KU_0001 VISTA 8:6228238-6829442
CIL_00006Z CIL_00006Z_0002 CGP 8:6406592-6643623

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000132 IEA establishment of mitotic spindle orientation
GO:0010468 IEA regulation of gene expression
GO:0021987 IEA cerebral cortex development
GO:0043549 IEA regulation of kinase activity
GO:0046605 IEA regulation of centrosome cycle
GO:0050727 IEA regulation of inflammatory response
GO:0060348 IEA bone development
GO:0060623 IEA regulation of chromosome condensation
GO:0071539 IEA protein localization to centrosome
GO:0097150 IEA neuronal stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039412 Mcph1-001 protein_coding Mus_musculus 0 396
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000004 58

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