C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00007Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000040048-ENSDARG00000057303 CGP 7955 1:38161657-38580268
GeneTranscriptPositionBiotype
ENSDARG00000029722 (hmgb2a)
high-mobility group box 2a 		ENSDART00000047159 (hmgb2a-001) 38578878-38581153 protein_coding
ENSDART00000137451 (hmgb2a-004) 38579182-38581014 protein_coding
ENSDART00000142060 (hmgb2a-002) 38580050-38581018 retained_intron
ENSDART00000142811 (hmgb2a-003) 38579800-38580363 protein_coding
ENSDARG00000040048 (GALNTL6)
polypeptide N-acetylgalactosaminyltransferase-like 6 		ENSDART00000058574 (GALNTL6-201) 38162493-38540523 protein_coding
ENSDART00000139448 (GALNTL6-001) 38161657-38541181 protein_coding
ENSDARG00000057303 (galnt7)
UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7 		ENSDART00000079928 (galnt7-001) 38552081-38576180 protein_coding
ENSDART00000114903 (galnt7-201) 38552424-38580268 protein_coding
ENSDART00000135666 (galnt7-002) 38563310-38571942 protein_coding
ENSDART00000140239 (galnt7-003) 38555774-38563925 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_00007Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174473-ENSG00000109586 CGP 9606 4:171812254-173323967
GeneTranscriptPositionBiotype
ENSG00000109586 (GALNT7)
polypeptide N-acetylgalactosaminyltransferase 7 		ENST00000265000 (GALNT7-001) 173168753-173323967 protein_coding
ENST00000502407 (GALNT7-007) 173282435-173295760 processed_transcript
ENST00000503213 (GALNT7-005) 173304019-173318660 protein_coding
ENST00000505308 (GALNT7-003) 173292131-173322011 protein_coding
ENST00000506317 (GALNT7-006) 173298036-173314037 retained_intron
ENST00000512285 (GALNT7-004) 173168811-173298371 protein_coding
ENST00000515862 (GALNT7-002) 173315841-173323127 retained_intron
ENSG00000241652 (RN7SL253P)
RNA, 7SL, cytoplasmic 253, pseudogene 		ENST00000476759 (RN7SL253P-201) 173141643-173141938 misc_RNA
ENSG00000248637 (RP11-485C11.1)
 ENST00000513791 (RP11-485C11.1-001) 172380028-172380487 processed_pseudogene
ENSG00000248774 (RP11-798M19.3)
 ENST00000507803 (RP11-798M19.3-001) 173322206-173329694 antisense

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00007Y_0001ENSDARG00000029722ENSDART00000047159ENSDART00000137451ENSDART00000142060ENSDART00000142811ENSDARG00000040048ENSDART00000058574ENSDART00000139448ENSDARG00000057303ENSDART00000079928ENSDART00000114903ENSDART00000135666ENSDART00000140239CIL_00007Y_0002ENSG00000109586ENST00000265000ENST00000502407ENST00000503213ENST00000505308ENST00000506317ENST00000512285ENST00000515862ENSG00000241652ENST00000476759ENSG00000248637ENST00000513791ENSG00000248774ENST00000507803
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00007Y_0001ENSDARG00000029722ENSDART00000047159ENSDART00000137451ENSDARG00000040048ENSDART00000058574ENSDART00000139448ENSDARG00000057303ENSDART00000079928CIL_00007Y_0002ENSG00000109586ENST00000265000ENST00000503213ENST00000505308ENST00000506317ENST00000512285ENST00000515862ENSG00000241652ENST00000476759ENSG00000248637ENST00000513791ENSG00000248774ENST00000507803
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029722 ENSDART00000047159 N/A N/A N/A 44.205±24.61 N/A N/A 425.429±233.94 669.326±249.76 4.281±0.00 N/A 42.227±0.00 N/A N/A N/A
ENSDART00000137451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.913±0.00 N/A N/A N/A
ENSDART00000142060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000040048 ENSDART00000058574 N/A N/A N/A 5.624±0.28 N/A N/A 0.062±0.02 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139448 N/A N/A N/A 11.954±0.57 N/A N/A 0.039±0.00 0.149±0.00 0.040±0.00 N/A 0.501±0.00 N/A N/A N/A
ENSDARG00000057303 ENSDART00000079928 N/A N/A N/A 12.868±2.57 N/A N/A 8.839±0.00 N/A 0.281±0.00 N/A 2.544±0.00 N/A N/A N/A
ENSDART00000114903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000135666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109586 ENST00000265000 1.022±0.00 1.099±0.00 N/A 0.669±0.22 2.263±0.73 3.814±0.32 0.588±0.51 2.138±1.97 N/A 1.668±0.04 0.113±0.08 3.815±1.47 3.748±1.39 2.933±0.75
ENST00000502407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503213 N/A N/A N/A N/A N/A N/A N/A 1.277±0.00 N/A N/A N/A N/A N/A N/A
ENST00000505308 0.943±0.00 N/A N/A 1.114±0.00 N/A N/A N/A N/A 1.189±0.00 N/A N/A 2.903±0.00 N/A 2.166±0.00
ENST00000506317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.081±0.00 16.447±0.00 6.858±0.00 N/A
ENST00000512285 N/A N/A 0.543±0.00 N/A 2.467±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A N/A N/A
ENSG00000241652 ENST00000476759 N/A 0.076±0.00 N/A 0.203±0.00 N/A N/A N/A N/A 0.344±0.00 N/A N/A N/A N/A N/A
ENSG00000248637 ENST00000513791 N/A N/A N/A 0.369±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.091±0.00
ENSG00000248774 ENST00000507803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.096±0.00 8.675±0.00

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