C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000Q6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138448-ENSG00000144369 CGP 9606 2:186590065-186765965
GeneTranscriptPositionBiotype
ENSG00000138448 (ITGAV)
integrin, alpha V 		ENST00000261023 (ITGAV-001) 186590065-186680901 protein_coding
ENST00000374907 (ITGAV-003) 186590080-186680897 protein_coding
ENST00000430709 (ITGAV-008) 186668877-186676283 protein_coding
ENST00000433736 (ITGAV-004) 186600205-186677441 protein_coding
ENST00000460641 (ITGAV-006) 186665126-186668020 retained_intron
ENST00000474571 (ITGAV-011) 186668845-186669957 processed_transcript
ENST00000496477 (ITGAV-005) 186667648-186675638 retained_intron
ENST00000496854 (ITGAV-007) 186668524-186669914 retained_intron
ENSG00000144369 (FAM171B)
family with sequence similarity 171, member B 		ENST00000304698 (FAM171B-001) 186693971-186765965 protein_coding
ENST00000612606 (FAM171B-201) 186694080-186751257 protein_coding
CIL_0000Q6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027087-ENSMUSG00000048388 CGP 10090 2:83724397-83883486
GeneTranscriptPositionBiotype
ENSMUSG00000027087 (Itgav)
integrin alpha V 		ENSMUST00000028499 (Itgav-001) 83724397-83806916 protein_coding
ENSMUST00000111740 (Itgav-005) 83724555-83806916 protein_coding
ENSMUST00000125360 (Itgav-002) 83724397-83756797 retained_intron
ENSMUST00000125402 (Itgav-008) 83801849-83803985 protein_coding
ENSMUST00000131192 (Itgav-009) 83802921-83806916 protein_coding
ENSMUST00000141725 (Itgav-006) 83724452-83747944 protein_coding
ENSMUST00000148256 (Itgav-004) 83724527-83725789 processed_transcript
ENSMUST00000151463 (Itgav-003) 83724466-83748372 retained_intron
ENSMUST00000155521 (Itgav-007) 83724457-83740738 processed_transcript
ENSMUSG00000048388 (Fam171b)
family with sequence similarity 171, member B 		ENSMUST00000051454 (Fam171b-001) 83812636-83883486 protein_coding
ENSMUST00000148184 (Fam171b-002) 83858088-83860473 processed_transcript
ENSMUSG00000081801 (Dnmt3l-ps1)
DNA methyltransferase 3-like, pseudogene 1 		ENSMUST00000118734 (Dnmt3l-ps1-001) 83744484-83745736 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000Q6_0001ENSG00000138448ENST00000261023ENST00000374907ENST00000430709ENST00000433736ENST00000460641ENST00000474571ENST00000496477ENST00000496854ENSG00000144369ENST00000304698ENST00000612606CIL_0000Q6_0002ENSMUSG00000027087ENSMUST00000028499ENSMUST00000111740ENSMUST00000125360ENSMUST00000125402ENSMUST00000131192ENSMUST00000141725ENSMUST00000148256ENSMUST00000151463ENSMUST00000155521ENSMUSG00000048388ENSMUST00000051454ENSMUST00000148184ENSMUSG00000081801ENSMUST00000118734
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000Q6_0001ENSG00000138448ENST00000261023ENST00000374907ENST00000433736ENSG00000144369ENST00000304698ENST00000612606CIL_0000Q6_0002ENSMUSG00000027087ENSMUST00000028499ENSMUST00000111740ENSMUST00000125360ENSMUST00000141725ENSMUSG00000048388ENSMUST00000051454ENSMUSG00000081801ENSMUST00000118734
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138448 ENST00000261023 10.748±0.00 6.575±0.00 1.446±0.00 16.452±4.50 11.645±1.89 8.988±2.14 25.175±10.13 12.577±11.33 7.374±4.76 10.263±0.46 4.792±0.00 13.273±5.17 12.129±6.65 4.771±2.49
ENST00000374907 N/A N/A 1.500±0.00 N/A 2.276±0.00 3.387±0.00 N/A 16.555±0.00 0.562±0.00 8.314±0.00 N/A 6.188±0.57 4.269±0.00 3.752±0.39
ENST00000430709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433736 N/A N/A 4.538±0.00 3.689±0.00 4.390±0.00 4.274±0.00 9.060±0.00 0.771±0.00 6.275±0.00 5.552±0.00 2.147±0.00 N/A N/A N/A
ENST00000460641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144369 ENST00000304698 1.298±0.00 1.401±0.00 0.420±0.00 31.678±2.23 1.108±0.39 1.647±0.69 0.413±0.14 0.519±0.50 0.406±0.35 1.170±0.17 0.382±0.09 1.671±0.95 0.950±0.57 0.850±0.54
ENST00000612606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.316±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027087 ENSMUST00000028499 6.543±3.04 5.017±0.90 12.992±0.09 2.370±0.29 5.011±0.70 4.209±0.40 2.259±0.98 12.630±0.77 2.116±0.55 6.842±0.76 1.264±0.53 11.746±2.59 12.825±5.32 0.618±0.28
ENSMUST00000111740 N/A N/A N/A 2.799±0.00 N/A N/A N/A N/A 0.641±0.25 N/A 0.947±0.47 6.883±0.00 7.990±1.27 0.334±0.02
ENSMUST00000125360 N/A 5.055±0.27 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.556±0.00 N/A N/A
ENSMUST00000125402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141725 N/A 34.160±7.09 N/A N/A 17.715±6.88 12.966±2.66 N/A 15.057±0.00 2.172±0.39 12.631±3.87 N/A 52.985±6.31 N/A N/A
ENSMUST00000148256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048388 ENSMUST00000051454 1.370±0.88 1.397±0.91 1.820±0.01 19.305±5.28 0.895±0.31 0.855±0.12 0.193±0.03 0.092±0.02 0.191±0.08 0.279±0.06 0.178±0.05 2.089±0.74 0.111±0.14 0.068±0.02
ENSMUST00000148184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081801 ENSMUST00000118734 0.087±0.07 0.108±0.04 0.070±0.02 0.034±0.01 0.179±0.10 0.197±0.07 0.031±0.01 0.187±0.06 0.027±0.02 0.154±0.05 N/A 0.156±0.13 0.135±0.08 0.059±0.04

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