C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin alpha V
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111740 Itgav-005 ENSMUSG00000027087 10090 + 2:83724555-83806916 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaTestisENSMUST00000111740
Transcript ID Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000111740 2.799±0.00 0.641±0.25 0.947±0.47 6.883±0.00 7.990±1.27 0.334±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DB CIL_0002DB_0002 CGP 2:83644435-83806916
CIL_0000Q6 CIL_0000Q6_0002 CGP 2:83724397-83883486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001568 IMP blood vessel development
GO:0005886 IDA plasma membrane
GO:0007155 IEA cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0008305 IEA integrin complex
GO:0009897 IDA external side of plasma membrane
GO:0043277 IMP apoptotic cell clearance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000044314 itgav-001 protein_coding Danio_rerio 0.000000000007 79
ENST00000261023 ITGAV-001 protein_coding Homo_sapiens 0 2880
ENST00000374907 ITGAV-003 protein_coding Homo_sapiens 0 3428
ENST00000433736 ITGAV-004 protein_coding Homo_sapiens 0 2835
ENST00000460641 ITGAV-006 retained_intron Homo_sapiens 0 449
ENST00000496477 ITGAV-005 retained_intron Homo_sapiens 0 363
ENST00000496854 ITGAV-007 retained_intron Homo_sapiens 0 217

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