C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 6 (testis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023006 Lrrc6-001 ENSMUSG00000022375 10090 - 15:66379858-66500910 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000023006
Transcript ID Adipose Adrenal Bladder Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023006 0.019±0.00 0.113±0.01 0.050±0.01 0.580±0.60 0.028±0.01 0.028±0.01 0.597±0.17 0.014±0.00 0.856±0.54 0.008±0.00 31.734±27.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XM CIL_0000XM_0003 CGP 15:65986387-66500910
CIL_0004ZO CIL_0004ZO_0002 CGP 15:66379858-66561046

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003341 IEA cilium movement
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005929 IEA cilium
GO:0008584 IEP male gonad development
GO:0030317 IEA sperm motility
GO:0036158 IEA outer dynein arm assembly
GO:0036159 IEA inner dynein arm assembly
GO:0044458 IEA motile cilium assembly
GO:0060287 IEA epithelial cilium movement involved in determination of left/right asymmetry
GO:0061458 IEA reproductive system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000250173 LRRC6-201 protein_coding Homo_sapiens 0 1051
ENST00000518101 LRRC6-005 processed_transcript Homo_sapiens 0 374
ENST00000518642 LRRC6-002 protein_coding Homo_sapiens 0 1051
ENST00000519595 LRRC6-001 protein_coding Homo_sapiens 0 1218
ENST00000520446 LRRC6-007 processed_transcript Homo_sapiens 0 516
ENST00000521430 LRRC6-003 processed_transcript Homo_sapiens 0 425
ENST00000522584 LRRC6-006 nonsense_mediated_decay Homo_sapiens 0 374
ENST00000618342 LRRC6-202 protein_coding Homo_sapiens 0 1206
ENST00000620350 LRRC6-203 protein_coding Homo_sapiens 0 1218

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