C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000Y4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000058369-ENSDARG00000079672 CGP 7955 7:12880714-13189936
GeneTranscriptPositionBiotype
ENSDARG00000058369 (mex3b)
mex-3 homolog B (C. elegans) 		ENSDART00000101537 (mex3b-201) 12880714-12884593 protein_coding
ENSDARG00000079672 (EFTUD1)
elongation factor Tu GTP binding domain containing 1 		ENSDART00000113905 (EFTUD1-201) 12959881-13189936 protein_coding
ENSDARG00000082308 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000117142 (5S_rRNA.189-201) 12991054-12991171 rRNA
CIL_0000Y4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183496-ENSG00000140598 CGP 9606 15:82041778-82262763
GeneTranscriptPositionBiotype
ENSG00000140598 (EFTUD1)
elongation factor Tu GTP binding domain containing 1 		ENST00000268206 (EFTUD1-002) 82130230-82262763 protein_coding
ENST00000359445 (EFTUD1-001) 82130233-82262714 protein_coding
ENST00000557844 (EFTUD1-004) 82261688-82262661 protein_coding
ENST00000557939 (EFTUD1-006) 82238308-82252759 protein_coding
ENST00000558974 (EFTUD1-005) 82261729-82262464 protein_coding
ENST00000559429 (EFTUD1-008) 82157466-82163957 retained_intron
ENST00000560095 (EFTUD1-009) 82214783-82215663 processed_transcript
ENST00000561331 (EFTUD1-007) 82227466-82233774 processed_transcript
ENST00000561340 (EFTUD1-010) 82152157-82160070 processed_transcript
ENST00000561389 (EFTUD1-003) 82238454-82262734 nonsense_mediated_decay
ENSG00000183496 (MEX3B)
mex-3 RNA binding family member B 		ENST00000329713 (MEX3B-001) 82041778-82046141 protein_coding
ENST00000558133 (MEX3B-002) 82041787-82046119 protein_coding
ENSG00000259518 (RP11-597K23.2)
 ENST00000557838 (RP11-597K23.2-003) 82088691-82091980 lincRNA
ENST00000558082 (RP11-597K23.2-001) 82088594-82097694 lincRNA
ENST00000559788 (RP11-597K23.2-002) 82088633-82095707 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000Y4_0001ENSDARG00000058369ENSDART00000101537ENSDARG00000079672ENSDART00000113905ENSDARG00000082308ENSDART00000117142CIL_0000Y4_0002ENSG00000140598ENST00000268206ENST00000359445ENST00000557844ENST00000557939ENST00000558974ENST00000559429ENST00000560095ENST00000561331ENST00000561340ENST00000561389ENSG00000183496ENST00000329713ENST00000558133ENSG00000259518ENST00000557838ENST00000558082ENST00000559788
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000Y4_0001ENSDARG00000058369ENSDART00000101537ENSDARG00000079672ENSDART00000113905ENSDARG00000082308ENSDART00000117142CIL_0000Y4_0002ENSG00000140598ENST00000268206ENST00000359445ENST00000561331ENSG00000183496ENST00000329713ENST00000558133ENSG00000259518ENST00000557838ENST00000558082ENST00000559788
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000058369 ENSDART00000101537 N/A N/A N/A 11.511±8.70 N/A N/A 1.373±0.34 0.913±0.13 0.038±0.00 N/A 2.035±0.00 N/A N/A N/A
ENSDARG00000079672 ENSDART00000113905 N/A N/A N/A 0.968±0.70 N/A N/A 0.913±0.19 0.699±0.27 1.300±0.00 N/A 1.184±0.00 N/A N/A N/A
ENSDARG00000082308 ENSDART00000117142 N/A N/A N/A 7.275±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140598 ENST00000268206 0.404±0.00 0.348±0.00 1.499±0.00 0.754±0.24 1.916±0.56 0.902±0.00 1.597±0.15 1.598±0.12 1.218±0.91 2.056±0.78 1.073±0.38 1.370±0.47 2.176±0.61 2.019±0.36
ENST00000359445 1.199±0.00 1.324±0.00 N/A 0.447±0.00 N/A 0.681±0.00 N/A N/A 0.389±0.00 0.638±0.00 0.585±0.00 2.428±0.00 1.695±0.00 1.379±0.54
ENST00000557844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561331 2.079±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183496 ENST00000329713 0.775±0.00 0.204±0.00 0.039±0.00 0.734±0.11 0.375±0.23 0.685±0.34 0.350±0.19 0.117±0.06 0.501±0.42 0.211±0.19 0.214±0.07 1.526±1.32 1.659±0.63 23.825±7.07
ENST00000558133 0.164±0.00 0.235±0.00 N/A N/A 0.160±0.07 0.282±0.00 0.071±0.00 0.138±0.00 N/A N/A N/A 0.252±0.17 0.168±0.00 N/A
ENSG00000259518 ENST00000557838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.346±0.93
ENST00000558082 N/A 0.013±0.00 0.022±0.00 0.030±0.00 0.008±0.00 N/A N/A N/A 0.011±0.00 0.003±0.00 N/A 0.009±0.00 0.013±0.00 0.240±0.14
ENST00000559788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.397±0.00

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