C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongation factor Tu GTP binding domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000268206 EFTUD1-002 ENSG00000140598 9606 - 15:82130230-82262763 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268206
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268206 0.404±0.00 0.348±0.00 1.499±0.00 0.754±0.24 1.916±0.56 0.902±0.00 1.597±0.15 1.598±0.12 1.218±0.91 2.056±0.78 1.073±0.38 1.370±0.47 2.176±0.61 2.019±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DT CIL_0008DT_0001 VISTA 15:81587611-82189547
CIL_0000Y4 CIL_0000Y4_0002 CGP 15:82041778-82262763
CIL_0000XZ CIL_0000XZ_0002 CGP 15:82130230-82284930

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 IEA translation elongation factor activity
GO:0003924 IDA:IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IDA GTP catabolic process
GO:0006414 IEA translational elongation
GO:0042256 IMP mature ribosome assembly
GO:0043022 IMP ribosome binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000179489 Eftud1-201 protein_coding Mus_musculus 0 3869
ENSMUST00000039881 Eftud1-001 protein_coding Mus_musculus 0 3869
ENSMUST00000125245 Eftud1-002 retained_intron Mus_musculus 0 2108
ENSMUST00000141726 Eftud1-003 protein_coding Mus_musculus 0 917
ENSMUST00000153265 Eftud1-004 processed_transcript Mus_musculus 0 595

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