C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: elongation factor Tu GTP binding domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140598 EFTUD1 9606 - 15:82130230-82262763 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268206 EFTUD1-002 82130230-82262763 protein_coding
  ENST00000359445 EFTUD1-001 82130233-82262714 protein_coding
  ENST00000557844 EFTUD1-004 82261688-82262661 protein_coding
  ENST00000557939 EFTUD1-006 82238308-82252759 protein_coding
  ENST00000558974 EFTUD1-005 82261729-82262464 protein_coding
  ENST00000559429 EFTUD1-008 82157466-82163957 retained_intron
  ENST00000560095 EFTUD1-009 82214783-82215663 processed_transcript
  ENST00000561331 EFTUD1-007 82227466-82233774 processed_transcript
  ENST00000561340 EFTUD1-010 82152157-82160070 processed_transcript
  ENST00000561389 EFTUD1-003 82238454-82262734 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268206ENST00000359445ENST00000561331
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268206 0.404±0.00 0.348±0.00 1.499±0.00 0.754±0.24 1.916±0.56 0.902±0.00 1.597±0.15 1.598±0.12 1.218±0.91 2.056±0.78 1.073±0.38 1.370±0.47 2.176±0.61 2.019±0.36
ENST00000359445 1.199±0.00 1.324±0.00 N/A 0.447±0.00 N/A 0.681±0.00 N/A N/A 0.389±0.00 0.638±0.00 0.585±0.00 2.428±0.00 1.695±0.00 1.379±0.54
ENST00000561331 2.079±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DT CIL_0008DT_0001 VISTA 15:81587611-82189547
CIL_0000Y4 CIL_0000Y4_0002 CGP 15:82041778-82262763
CIL_0000XZ CIL_0000XZ_0002 CGP 15:82130230-82284930

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003746 IEA translation elongation factor activity
GO:0003924 IDA:IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IDA GTP catabolic process
GO:0006414 IEA translational elongation
GO:0042256 IMP mature ribosome assembly
GO:0043022 IMP ribosome binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079672 EFTUD1 elongation factor Tu GTP binding domain containing 1 protein_coding Danio_rerio
ENSMUSG00000038563 Eftud1 elongation factor Tu GTP binding domain containing 1 protein_coding Mus_musculus

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