C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000YH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000054433-ENSDARG00000014003 CGP 7955 5:37362521-37484071
GeneTranscriptPositionBiotype
ENSDARG00000083770 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000119170 (5S_rRNA.349-201) 37441316-37441446 rRNA

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
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CIL_0000YH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000181704-ENSG00000130052 CGP 9606 X:68498323-68725842
GeneTranscriptPositionBiotype
ENSG00000130052 (STARD8)
StAR-related lipid transfer (START) domain containing 8 		ENST00000252336 (STARD8-201) 68647669-68725840 protein_coding
ENST00000374597 (STARD8-003) 68693651-68725833 protein_coding
ENST00000374599 (STARD8-004) 68647768-68725836 protein_coding
ENST00000488088 (STARD8-002) 68647666-68656551 processed_transcript
ENST00000523864 (STARD8-001) 68647669-68725842 nonsense_mediated_decay
ENSG00000181704 (YIPF6)
Yip1 domain family, member 6 		ENST00000374622 (YIPF6-201) 68498782-68537266 protein_coding
ENST00000374643 (YIPF6-004) 68499049-68531970 processed_transcript
ENST00000451537 (YIPF6-003) 68498562-68531982 protein_coding
ENST00000462683 (YIPF6-001) 68498323-68537285 protein_coding
ENST00000462972 (YIPF6-005) 68499081-68513405 processed_transcript
ENST00000470730 (YIPF6-002) 68499034-68515340 processed_transcript
ENST00000496576 (YIPF6-006) 68511807-68513641 processed_transcript
ENSG00000236735 (RPL31P63)
ribosomal protein L31 pseudogene 63 		ENST00000422565 (RPL31P63-001) 68600099-68600473 processed_pseudogene
CIL_0000YH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047694-ENSMUSG00000031216 CGP 10090 X:98936316-99074728
GeneTranscriptPositionBiotype
ENSMUSG00000031216 (Stard8)
START domain containing 8 		ENSMUST00000036606 (Stard8-001) 99042581-99074728 protein_coding
ENSMUST00000127361 (Stard8-004) 99068608-99070444 processed_transcript
ENSMUST00000145820 (Stard8-003) 99043984-99065823 processed_transcript
ENSMUST00000149999 (Stard8-002) 99003248-99065672 protein_coding
ENSMUSG00000047694 (Yipf6)
Yip1 domain family, member 6 		ENSMUST00000054697 (Yipf6-001) 98937761-98949017 protein_coding
ENSMUST00000113811 (Yipf6-002) 98936316-98945131 protein_coding
ENSMUST00000124010 (Yipf6-006) 98937301-98939881 protein_coding
ENSMUST00000140479 (Yipf6-004) 98938207-98944035 retained_intron
ENSMUST00000149082 (Yipf6-003) 98937761-98944906 retained_intron
ENSMUST00000151353 (Yipf6-005) 98937273-98943635 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000YH_0001ENSDARG00000083770ENSDART00000119170CIL_0000YH_0002ENSG00000130052ENST00000252336ENST00000374597ENST00000374599ENST00000488088ENST00000523864ENSG00000181704ENST00000374622ENST00000374643ENST00000451537ENST00000462683ENST00000462972ENST00000470730ENST00000496576ENSG00000236735ENST00000422565CIL_0000YH_0003ENSMUSG00000031216ENSMUST00000036606ENSMUST00000127361ENSMUST00000145820ENSMUST00000149999ENSMUSG00000047694ENSMUST00000054697ENSMUST00000113811ENSMUST00000124010ENSMUST00000140479ENSMUST00000149082ENSMUST00000151353
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000YH_0001ENSDARG00000083770ENSDART00000119170CIL_0000YH_0002ENSG00000130052ENST00000252336ENST00000374597ENST00000374599ENST00000488088ENSG00000181704ENST00000374622ENST00000374643ENST00000462683ENSG00000236735ENST00000422565CIL_0000YH_0003ENSMUSG00000031216ENSMUST00000036606ENSMUST00000149999ENSMUSG00000047694ENSMUST00000054697ENSMUST00000113811ENSMUST00000149082ENSMUST00000151353
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000083770 ENSDART00000119170 N/A N/A N/A 5.365±0.00 N/A N/A 49.290±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130052 ENST00000252336 N/A N/A N/A N/A 0.646±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374597 6.414±0.00 5.535±0.00 0.623±0.00 2.257±0.00 1.391±0.00 1.319±0.73 2.895±2.60 4.924±3.60 1.149±0.26 4.873±3.47 0.485±0.05 1.096±0.66 5.529±1.88 0.725±0.48
ENST00000374599 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.718±0.00 N/A 0.275±0.00 1.475±0.00 N/A
ENST00000488088 N/A N/A N/A 2.802±0.00 1.542±0.00 0.860±0.00 0.401±0.00 N/A 1.341±0.00 N/A 0.374±0.11 0.577±0.00 N/A 2.116±0.62
ENST00000523864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000181704 ENST00000374622 2.782±0.00 2.255±0.00 1.545±0.00 3.230±0.00 5.444±0.00 4.901±0.00 N/A 4.069±0.83 3.250±0.00 3.448±1.38 3.947±0.00 N/A 2.091±1.40 3.387±0.62
ENST00000374643 N/A N/A N/A N/A N/A N/A N/A N/A 8.216±0.00 N/A N/A N/A N/A N/A
ENST00000451537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462683 2.488±0.00 1.072±0.00 1.233±0.00 1.565±0.15 2.639±0.92 1.200±0.09 1.003±0.33 1.246±0.16 1.089±0.15 1.982±0.58 0.874±0.08 3.296±1.54 1.960±0.51 1.447±0.96
ENST00000462972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236735 ENST00000422565 0.129±0.00 0.091±0.00 N/A 0.048±0.00 0.093±0.00 0.129±0.00 0.042±0.00 0.186±0.00 N/A 0.262±0.00 0.446±0.00 0.346±0.22 0.283±0.00 0.041±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031216 ENSMUST00000036606 9.093±2.88 5.142±1.54 5.045±0.63 1.145±0.25 4.628±2.27 2.644±0.39 7.795±1.56 23.586±2.83 1.765±0.65 29.128±6.75 3.377±0.64 3.469±1.56 17.405±13.05 0.978±0.84
ENSMUST00000127361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149999 N/A 27.074±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047694 ENSMUST00000054697 3.416±1.64 2.967±0.80 6.051±2.61 4.719±1.60 2.814±1.05 4.744±1.38 3.074±0.16 3.278±0.85 2.911±1.40 7.403±2.83 0.608±0.12 1.649±0.58 1.830±0.55 1.583±0.00
ENSMUST00000113811 10.016±1.14 8.217±2.42 N/A N/A 8.913±1.96 19.874±1.94 5.285±1.01 9.512±2.00 8.111±1.45 17.178±1.82 N/A 8.226±1.69 11.763±4.25 9.541±1.39
ENSMUST00000124010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.291±0.00
ENSMUST00000151353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.198±1.55 7.719±0.00

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