C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00013S_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179270-ENSG00000115295 CGP 9606 2:29060976-29189643
GeneTranscriptPositionBiotype
ENSG00000115295 (CLIP4)
CAP-GLY domain containing linker protein family, member 4 		ENST00000320081 (CLIP4-001) 29115426-29183813 protein_coding
ENST00000401605 (CLIP4-003) 29097705-29174713 protein_coding
ENST00000401617 (CLIP4-004) 29097728-29189643 protein_coding
ENST00000404424 (CLIP4-005) 29113996-29181923 protein_coding
ENST00000415891 (CLIP4-007) 29097741-29174641 nonsense_mediated_decay
ENST00000438819 (CLIP4-011) 29130671-29135618 protein_coding
ENST00000449202 (CLIP4-009) 29118195-29135662 protein_coding
ENST00000456385 (CLIP4-006) 29114878-29174712 nonsense_mediated_decay
ENST00000471165 (CLIP4-010) 29130614-29131360 processed_transcript
ENST00000481628 (CLIP4-013) 29175363-29181758 processed_transcript
ENST00000491701 (CLIP4-008) 29121514-29132650 retained_intron
ENST00000493551 (CLIP4-012) 29160366-29167876 retained_intron
ENSG00000179270 (C2orf71)
chromosome 2 open reading frame 71 		ENST00000331664 (C2orf71-001) 29061692-29074261 protein_coding
ENST00000602958 (C2orf71-002) 29060976-29062155 processed_transcript
ENSG00000189350 (FAM179A)
family with sequence similarity 179, member A 		ENST00000379558 (FAM179A-003) 28981298-29061373 protein_coding
ENST00000401723 (FAM179A-007) 28956611-29033520 protein_coding
ENST00000420297 (FAM179A-004) 28970939-28999248 protein_coding
ENST00000440012 (FAM179A-005) 29018261-29024374 protein_coding
ENST00000460951 (FAM179A-006) 29032771-29036587 retained_intron
ENST00000465300 (FAM179A-001) 29014467-29052230 processed_transcript
ENST00000475900 (FAM179A-002) 29033431-29052230 retained_intron
ENSG00000229224 (AC105398.3)
 ENST00000446073 (AC105398.3-001) 29096843-29097525 antisense
CIL_00013S_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044375-ENSMUSG00000024059 CGP 10090 17:71743557-71858351
GeneTranscriptPositionBiotype
ENSMUSG00000024059 (Clip4)
CAP-GLY domain containing linker protein family, member 4 		ENSMUST00000024854 (Clip4-201) 71781947-71858351 protein_coding
ENSMUSG00000044375 (BC027072)
cDNA sequence BC027072 		ENSMUST00000057405 (BC027072-201) 71743557-71752885 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013S_0001ENSG00000115295ENST00000320081ENST00000401605ENST00000401617ENST00000404424ENST00000415891ENST00000438819ENST00000449202ENST00000456385ENST00000471165ENST00000481628ENST00000491701ENST00000493551ENSG00000179270ENST00000331664ENST00000602958ENSG00000189350ENST00000379558ENST00000401723ENST00000420297ENST00000440012ENST00000460951ENST00000465300ENST00000475900ENSG00000229224ENST00000446073CIL_00013S_0002ENSMUSG00000024059ENSMUST00000024854ENSMUSG00000044375ENSMUST00000057405
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00013S_0001ENSG00000115295ENST00000320081ENST00000401605ENST00000401617ENST00000404424ENST00000415891ENSG00000179270ENST00000331664ENSG00000189350ENST00000379558ENST00000401723ENST00000440012ENST00000460951ENST00000465300ENST00000475900ENSG00000229224ENST00000446073CIL_00013S_0002ENSMUSG00000024059ENSMUST00000024854ENSMUSG00000044375ENSMUST00000057405
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115295 ENST00000320081 5.329±0.00 2.756±0.00 N/A 6.405±0.49 3.649±2.79 7.396±0.00 5.057±2.48 2.742±0.00 1.371±0.94 4.007±0.10 16.796±0.00 5.096±2.37 3.002±0.79 3.001±0.42
ENST00000401605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.856±0.00 N/A N/A
ENST00000401617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.077±0.00 N/A N/A 7.223±0.00
ENST00000404424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.958±0.00 1.549±0.42 3.311±0.00 N/A
ENST00000415891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.781±0.00 N/A N/A 6.325±3.13
ENST00000438819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000449202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179270 ENST00000331664 N/A N/A 0.132±0.00 0.057±0.00 0.112±0.00 0.050±0.00 0.206±0.00 0.208±0.00 0.014±0.00 N/A N/A 0.119±0.00 N/A N/A
ENST00000602958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189350 ENST00000379558 0.036±0.00 0.113±0.00 0.034±0.00 0.040±0.03 0.030±0.01 0.042±0.00 0.105±0.02 0.028±0.02 0.031±0.00 0.266±0.00 N/A 0.086±0.07 0.031±0.03 0.081±0.01
ENST00000401723 N/A N/A 0.765±0.00 N/A N/A N/A N/A N/A N/A N/A 1.033±0.00 N/A N/A N/A
ENST00000420297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440012 N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A 0.583±0.00 N/A N/A
ENST00000460951 N/A N/A N/A 0.690±0.29 N/A N/A N/A N/A N/A 1.338±0.00 N/A 0.600±0.00 N/A N/A
ENST00000465300 N/A N/A N/A 0.299±0.19 0.137±0.00 N/A 2.178±0.00 0.629±0.00 N/A 4.601±0.00 1.474±0.46 3.413±2.81 0.266±0.15 0.672±0.04
ENST00000475900 0.082±0.00 0.155±0.00 N/A 0.135±0.00 0.061±0.02 0.031±0.00 0.113±0.00 0.072±0.00 0.011±0.00 0.094±0.00 0.062±0.00 0.069±0.00 0.021±0.00 0.101±0.00
ENSG00000229224 ENST00000446073 N/A N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A N/A N/A N/A N/A 0.318±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024059 ENSMUST00000024854 1.175±0.90 N/A 4.443±0.12 2.922±1.12 7.187±3.95 1.188±0.43 39.610±7.26 1.566±0.82 0.086±0.04 7.300±3.21 16.231±1.83 2.276±1.60 0.152±0.09 N/A
ENSMUSG00000044375 ENSMUST00000057405 0.005±0.00 N/A N/A 0.024±0.02 0.029±0.00 N/A 0.025±0.02 N/A 0.014±0.01 0.023±0.01 0.007±0.00 N/A N/A 0.652±0.31

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