C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: F-box and WD-40 domain protein 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177336 Fbxw10-004 ENSMUSG00000090173 10090 + 11:62847123-62877462 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverOvaryTestisENSMUST00000177336
Transcript ID Breast Liver Ovary Testis
ENSMUST00000177336 0.528±0.00 0.037±0.02 0.535±0.22 7.873±1.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QF CIL_0008QF_0002 VISTA 11:62683404-63286950
CIL_0000DU CIL_0000DU_0002 CGP 11:62753377-62850808
CIL_0005CX CIL_0005CX_0002 CGP 11:62820231-62877465
CIL_00013W CIL_00013W_0002 CGP 11:62847069-62916780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301938 FBXW10-001 protein_coding Homo_sapiens 0 1280
ENST00000308799 FBXW10-002 protein_coding Homo_sapiens 0 928
ENST00000354433 CDRT1-001 protein_coding Homo_sapiens 0 547
ENST00000395665 FBXW10-003 protein_coding Homo_sapiens 0 1411
ENST00000395667 CDRT1-201 protein_coding Homo_sapiens 0 1026
ENST00000395906 CDRT1-007 protein_coding Homo_sapiens 0 1026
ENST00000455584 RP11-385D13.1-001 protein_coding Homo_sapiens 0 893
ENST00000475944 CDRT1-004 retained_intron Homo_sapiens 0 289
ENST00000571263 CDRT1-006 nonsense_mediated_decay Homo_sapiens 0 241
ENST00000574478 FBXW10-005 nonsense_mediated_decay Homo_sapiens 0 1031
ENST00000583965 CDRT1-005 protein_coding Homo_sapiens 0 215

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