C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000169_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130164-ENSG00000161888 CGP 9606 19:11089362-11155808
GeneTranscriptPositionBiotype
ENSG00000130164 (LDLR)
low density lipoprotein receptor 		ENST00000252444 (LDLR-004) 11090599-11133816 protein_coding
ENST00000455727 (LDLR-007) 11089463-11131484 protein_coding
ENST00000535915 (LDLR-001) 11089463-11131538 protein_coding
ENST00000545707 (LDLR-006) 11089463-11131610 protein_coding
ENST00000557933 (LDLR-012) 11089462-11131525 protein_coding
ENST00000557958 (LDLR-009) 11089463-11104268 retained_intron
ENST00000558013 (LDLR-002) 11089478-11131812 protein_coding
ENST00000558518 (LDLR-003) 11089362-11132163 protein_coding
ENST00000558528 (LDLR-010) 11106356-11107515 retained_intron
ENST00000559340 (LDLR-015) 11113371-11120406 nonsense_mediated_decay
ENST00000560173 (LDLR-013) 11110713-11113481 retained_intron
ENST00000560467 (LDLR-011) 11105307-11113624 protein_coding
ENST00000560502 (LDLR-008) 11089463-11100578 retained_intron
ENST00000560628 (LDLR-014) 11127547-11133521 processed_transcript
CIL_000169_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032193-ENSMUSG00000074476 CGP 10090 9:21723576-21760286
GeneTranscriptPositionBiotype
ENSMUSG00000032193 (Ldlr)
low density lipoprotein receptor 		ENSMUST00000034713 (Ldlr-201) 21723576-21749916 protein_coding
ENSMUSG00000074476 (Spc24)
SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae) 		ENSMUST00000098942 (Spc24-201) 21755442-21760286 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000169_0001ENSG00000130164ENST00000252444ENST00000455727ENST00000535915ENST00000545707ENST00000557933ENST00000557958ENST00000558013ENST00000558518ENST00000558528ENST00000559340ENST00000560173ENST00000560467ENST00000560502ENST00000560628CIL_000169_0002ENSMUSG00000032193ENSMUST00000034713ENSMUSG00000074476ENSMUST00000098942
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000169_0001ENSG00000130164ENST00000252444ENST00000535915ENST00000557958ENST00000558013ENST00000558518CIL_000169_0002ENSMUSG00000032193ENSMUST00000034713ENSMUSG00000074476ENSMUST00000098942
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130164 ENST00000252444 N/A N/A N/A 2.681±0.00 3.675±0.24 1.809±0.00 N/A 2.691±0.00 1.118±0.00 N/A N/A 33.089±16.03 5.553±0.00 1.559±0.45
ENST00000455727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.023±0.00 11.972±0.00 N/A
ENST00000545707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A
ENST00000558013 3.217±0.00 9.655±0.00 N/A 4.507±0.00 N/A 3.635±0.00 N/A N/A 1.395±0.00 N/A 0.294±0.00 28.361±0.00 N/A N/A
ENST00000558518 N/A N/A N/A 1.068±0.00 6.473±0.00 3.246±0.00 0.948±0.00 1.619±0.00 1.517±0.00 7.944±0.00 N/A 9.355±0.00 N/A N/A
ENST00000558528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032193 ENSMUST00000034713 14.626±1.99 62.610±15.90 14.008±2.65 6.843±0.90 19.336±8.11 65.838±5.64 2.617±0.77 11.957±0.85 33.062±19.63 40.476±3.15 2.184±0.34 30.184±6.41 41.685±24.25 0.888±0.33
ENSMUSG00000074476 ENSMUST00000098942 2.246±1.62 0.686±0.33 1.023±0.05 3.740±2.30 0.741±0.22 5.930±1.62 1.447±0.38 1.753±0.45 13.968±11.67 0.863±0.27 0.593±0.09 5.205±1.81 10.313±6.76 6.032±0.65

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