C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252444 LDLR-004 ENSG00000130164 9606 + 19:11090599-11133816 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000252444
Transcript ID Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000252444 2.681±0.00 3.675±0.24 1.809±0.00 2.691±0.00 1.118±0.00 33.089±16.03 5.553±0.00 1.559±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058P CIL_00058P_0003 CGP 19:10961001-11133816
CIL_000169 CIL_000169_0001 CGP 19:11089362-11155808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034713 Ldlr-201 protein_coding Mus_musculus 0 1890

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