C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009732 St6galnac1-001 ENSMUSG00000009588 10090 - 11:116765025-116775507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000009732
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000009732 0.079±0.04 0.149±0.08 0.007±0.00 0.009±0.00 0.277±0.09 3.581±1.39 0.069±0.00 0.222±0.14 0.011±0.01 0.094±0.02 0.078±0.04 0.014±0.01 0.093±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000194 CIL_000194_0002 CGP 11:116675303-116775507
CIL_0002X6 CIL_0002X6_0002 CGP 11:116765025-116828046

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001574 TAS ganglioside biosynthetic process
GO:0001665 IDA alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0009312 IDA oligosaccharide biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000156626 ST6GALNAC1-001 protein_coding Homo_sapiens 0 961
ENST00000585633 ST6GALNAC1-008 nonsense_mediated_decay Homo_sapiens 9e-17 92
ENST00000589004 ST6GALNAC1-011 processed_transcript Homo_sapiens 8.00141e-43 178
ENST00000590784 ST6GALNAC1-010 protein_coding Homo_sapiens 0 305
ENST00000592042 ST6GALNAC1-004 nonsense_mediated_decay Homo_sapiens 0 961

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