C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0001B5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000172296-ENSG00000101230 CGP 9606 20:13008979-13300651
GeneTranscriptPositionBiotype
ENSG00000101230 (ISM1)
isthmin 1, angiogenesis inhibitor
ENST00000262487 (ISM1-001) 13221771-13300651 protein_coding
ENSG00000172296 (SPTLC3)
serine palmitoyltransferase, long chain base subunit 3
ENST00000399002 (SPTLC3-006) 13008994-13169103 protein_coding
ENST00000431275 (SPTLC3-003) 13126646-13164471 protein_coding
ENST00000434210 (SPTLC3-001) 13008987-13072371 protein_coding
ENST00000450297 (SPTLC3-002) 13009349-13079867 protein_coding
ENST00000476791 (SPTLC3-005) 13008979-13051018 processed_transcript
ENST00000485952 (SPTLC3-004) 13126655-13133042 processed_transcript
ENSG00000225956 (RP5-1077I2.3)
ENST00000420044 (RP5-1077I2.3-001) 13244064-13245369 antisense
ENSG00000226263 (ISM1-AS1)
ISM1 antisense RNA 1
ENST00000431407 (ISM1-AS1-001) 13237801-13239674 antisense
ENSG00000271426 (RP4-718P11.1)
ENST00000603234 (RP4-718P11.1-001) 13073667-13074312 processed_pseudogene
CIL_0001B5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039092-ENSMUSG00000074766 CGP 10090 2:139493913-139758581
GeneTranscriptPositionBiotype
ENSMUSG00000039092 (Sptlc3)
serine palmitoyltransferase, long chain base subunit 3
ENSMUST00000047370 (Sptlc3-002) 139493920-139637674 protein_coding
ENSMUST00000110083 (Sptlc3-001) 139493913-139637056 protein_coding
ENSMUSG00000074766 (Ism1)
isthmin 1 homolog (zebrafish)
ENSMUST00000099307 (Ism1-201) 139678178-139758581 protein_coding
ENSMUST00000184404 (Ism1-001) 139678178-139758580 protein_coding
ENSMUSG00000085071 (Gm14066)
predicted gene 14066
ENSMUST00000134801 (Gm14066-001) 139256876-139677714 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001B5_0001ENSG00000101230ENST00000262487ENSG00000172296ENST00000399002ENST00000431275ENST00000434210ENST00000450297ENST00000476791ENST00000485952ENSG00000225956ENST00000420044ENSG00000226263ENST00000431407ENSG00000271426ENST00000603234CIL_0001B5_0002ENSMUSG00000039092ENSMUST00000047370ENSMUST00000110083ENSMUSG00000074766ENSMUST00000099307ENSMUST00000184404ENSMUSG00000085071ENSMUST00000134801
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001B5_0001ENSG00000101230ENST00000262487ENSG00000172296ENST00000399002ENST00000431275ENST00000450297ENST00000476791ENSG00000225956ENST00000420044ENSG00000226263ENST00000431407ENSG00000271426ENST00000603234CIL_0001B5_0002ENSMUSG00000039092ENSMUST00000047370ENSMUST00000110083ENSMUSG00000074766ENSMUST00000099307ENSMUST00000184404ENSMUSG00000085071ENSMUST00000134801
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101230 ENST00000262487 9.621±0.00 0.779±0.00 0.263±0.00 0.405±0.00 6.420±0.00 1.703±1.56 0.295±0.28 1.478±0.39 1.319±0.92 1.013±0.70 0.601±0.41 0.575±0.25 11.074±6.10 0.340±0.21
ENSG00000172296 ENST00000399002 0.574±0.00 0.234±0.00 1.909±0.00 0.112±0.07 0.928±0.21 N/A 0.389±0.24 1.885±0.00 1.289±0.47 1.105±0.09 0.046±0.01 0.666±0.27 5.283±1.81 1.186±0.00
ENST00000431275 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.778±0.00 6.227±0.00
ENST00000434210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450297 N/A N/A N/A N/A 2.086±0.00 N/A N/A N/A N/A N/A N/A N/A 10.235±0.00 N/A
ENST00000476791 N/A N/A 1.231±0.00 N/A N/A 0.496±0.00 0.131±0.00 N/A N/A 0.632±0.00 0.143±0.00 N/A N/A 0.494±0.06
ENST00000485952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225956 ENST00000420044 0.094±0.00 N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A 2.224±0.00 0.108±0.00 0.708±0.27
ENSG00000226263 ENST00000431407 0.100±0.00 0.101±0.00 N/A N/A 0.120±0.00 N/A N/A N/A 0.017±0.00 0.447±0.00 N/A 0.064±0.00 N/A 1.655±0.00
ENSG00000271426 ENST00000603234 N/A N/A 0.226±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.00 N/A 0.072±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039092 ENSMUST00000047370 N/A N/A 1.636±0.00 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A 0.307±0.00 N/A N/A
ENSMUST00000110083 0.578±0.04 N/A 12.122±1.71 0.105±0.07 0.584±0.25 N/A 0.043±0.01 0.773±0.13 0.016±0.01 0.784±0.37 0.024±0.01 0.568±0.40 0.113±0.07 0.254±0.15
ENSMUSG00000074766 ENSMUST00000099307 N/A N/A N/A N/A 0.686±0.00 N/A 0.265±0.00 0.626±0.00 0.024±0.01 N/A 0.186±0.07 0.932±0.18 0.593±0.74 0.149±0.09
ENSMUST00000184404 1.080±0.41 12.662±6.03 3.014±0.23 0.790±0.39 6.770±1.74 2.195±0.60 0.623±0.20 0.507±0.10 0.055±0.03 27.364±4.79 0.180±0.11 2.427±0.39 0.658±0.87 0.221±0.07
ENSMUSG00000085071 ENSMUST00000134801 N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A 0.013±0.00 0.021±0.01 N/A

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