C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine palmitoyltransferase, long chain base subunit 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039092 Sptlc3 10090 + 2:139493913-139637674 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047370 Sptlc3-002 139493920-139637674 protein_coding
  ENSMUST00000110083 Sptlc3-001 139493913-139637056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047370ENSMUST00000110083
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047370 N/A 1.636±0.00 0.010±0.00 N/A N/A N/A N/A N/A N/A 0.307±0.00 N/A N/A
ENSMUST00000110083 0.578±0.04 12.122±1.71 0.105±0.07 0.584±0.25 0.043±0.01 0.773±0.13 0.016±0.01 0.784±0.37 0.024±0.01 0.568±0.40 0.113±0.07 0.254±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000361 CIL_000361_0002 CGP 2:138256565-139637674
CIL_0001B5 CIL_0001B5_0002 CGP 2:139493913-139758581

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004758 IEA serine C-palmitoyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0017059 IEA serine C-palmitoyltransferase complex
GO:0030170 IEA pyridoxal phosphate binding
GO:0046520 IEA sphingoid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030743 sptlc3 serine palmitoyltransferase, long chain base subunit 3 protein_coding Danio_rerio
ENSG00000172296 SPTLC3 serine palmitoyltransferase, long chain base subunit 3 protein_coding Homo_sapiens

Loading