C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine palmitoyltransferase, long chain base subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399002 SPTLC3-006 ENSG00000172296 9606 + 20:13008994-13169103 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399002
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399002 0.574±0.00 0.234±0.00 1.909±0.00 0.112±0.07 0.928±0.21 0.389±0.24 1.885±0.00 1.289±0.47 1.105±0.09 0.046±0.01 0.666±0.27 5.283±1.81 1.186±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000361 CIL_000361_0001 CGP 20:11890723-13169103
CIL_0001B5 CIL_0001B5_0001 CGP 20:13008979-13300651

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004758 IDA serine C-palmitoyltransferase activity
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006520 IEA cellular amino acid metabolic process
GO:0006665 TAS sphingolipid metabolic process
GO:0008152 IEA metabolic process
GO:0008483 IEA transaminase activity
GO:0009058 IEA biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016829 IEA lyase activity
GO:0017059 IDA serine C-palmitoyltransferase complex
GO:0030148 TAS sphingolipid biosynthetic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0044281 TAS small molecule metabolic process
GO:0046520 IDA sphingoid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110083 Sptlc3-001 protein_coding Mus_musculus 0 1066
ENSMUST00000047370 Sptlc3-002 protein_coding Mus_musculus 0 1055

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