C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine palmitoyltransferase, long chain base subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110083 Sptlc3-001 ENSMUSG00000039092 10090 + 2:139493913-139637056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110083
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110083 0.578±0.04 12.122±1.71 0.105±0.07 0.584±0.25 0.043±0.01 0.773±0.13 0.016±0.01 0.784±0.37 0.024±0.01 0.568±0.40 0.113±0.07 0.254±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000361 CIL_000361_0002 CGP 2:138256565-139637674
CIL_0001B5 CIL_0001B5_0002 CGP 2:139493913-139758581

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004758 IEA serine C-palmitoyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0030170 IEA pyridoxal phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399002 SPTLC3-006 protein_coding Homo_sapiens 0 1066

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