C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAS p21 protein activator 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042135 Rasa4-001 ENSMUSG00000004952 10090 + 5:136083916-136111860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042135 5.266±2.01 8.354±1.28 2.632±0.43 1.885±1.29 8.987±1.94 8.816±1.83 1.103±0.32 2.035±0.34 0.699±0.42 3.414±0.59 7.387±1.54 4.756±1.76 0.538±0.27 0.570±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GU CIL_0001GU_0002 CGP 5:136054492-136111860

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005099 IBA Ras GTPase activator activity
GO:0005737 IBA cytoplasm
GO:0031235 IBA intrinsic component of the cytoplasmic side of the plasma membrane
GO:0032320 IBA positive regulation of Ras GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0046580 IBA negative regulation of Ras protein signal transduction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262940 RASA4-001 protein_coding Homo_sapiens 0 2377
ENST00000306682 RASA4B-003 protein_coding Homo_sapiens 0 2285
ENST00000418645 AC004985.12-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 233
ENST00000424092 RASA4CP-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1280
ENST00000449970 RASA4-004 protein_coding Homo_sapiens 0 1958
ENST00000460726 RASA4DP-001 unprocessed_pseudogene Homo_sapiens 0 809
ENST00000461209 RASA4-003 protein_coding Homo_sapiens 0 2296
ENST00000462172 RASA4-002 protein_coding Homo_sapiens 0 2296
ENST00000465829 RASA4B-001 protein_coding Homo_sapiens 0 2366
ENST00000467351 RASA4B-004 retained_intron Homo_sapiens 8e-29 132
ENST00000477184 RASA4B-002 retained_intron Homo_sapiens 0 300
ENST00000488284 RASA4B-005 retained_intron Homo_sapiens 0 501
ENST00000495352 RASA4B-006 retained_intron Homo_sapiens 0 881
ENST00000514917 RP11-514P8.7-001 protein_coding Homo_sapiens 0 261
ENST00000519539 RASA4-014 nonsense_mediated_decay Homo_sapiens 0 553
ENST00000519541 RP11-514P8.6-001 nonsense_mediated_decay Homo_sapiens 0 2296
ENST00000520042 RASA4-012 protein_coding Homo_sapiens 0 490
ENST00000520577 RASA4-017 retained_intron Homo_sapiens 0 359
ENST00000521076 RASA4-011 protein_coding Homo_sapiens 0 311
ENST00000521397 RASA4-016 protein_coding Homo_sapiens 0 599
ENST00000521822 RASA4-018 processed_transcript Homo_sapiens 7e-28 128
ENST00000521892 RASA4-008 retained_intron Homo_sapiens 0 326
ENST00000522223 RASA4-007 retained_intron Homo_sapiens 0 887
ENST00000522443 RASA4-009 retained_intron Homo_sapiens 0 392
ENST00000522801 RASA4-010 protein_coding Homo_sapiens 0 833
ENST00000523568 RASA4-005 retained_intron Homo_sapiens 0 678
ENST00000541662 RASA4B-201 protein_coding Homo_sapiens 0 1947

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